Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3402 and Shewana3_3403 are separated by 231 nucleotides Shewana3_3403 and Shewana3_3404 are separated by 162 nucleotides Shewana3_3404 and Shewana3_3405 are separated by 135 nucleotides
Shewana3_3402: Shewana3_3402 - aminopeptidase B (RefSeq), at 4,070,769 to 4,072,061
_3402
Shewana3_3403: Shewana3_3403 - sugar fermentation stimulation protein A (RefSeq), at 4,072,293 to 4,072,997
_3403
Shewana3_3404: Shewana3_3404 - TraR/DksA family transcriptional regulator (RefSeq), at 4,073,160 to 4,073,603
_3404
Shewana3_3405: Shewana3_3405 - glutamyl-tRNA synthetase, class Ic (RefSeq), at 4,073,739 to 4,074,638
_3405
Position (kb)
4072
4073 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4071.355 kb on - strand, within Shewana3_3402 at 4071.434 kb on + strand, within Shewana3_3402 at 4071.523 kb on - strand, within Shewana3_3402 at 4071.563 kb on - strand, within Shewana3_3402 at 4071.767 kb on - strand, within Shewana3_3402 at 4072.022 kb on + strand at 4072.030 kb on - strand at 4072.040 kb on - strand at 4072.054 kb on - strand at 4072.099 kb on - strand at 4072.136 kb on + strand at 4072.148 kb on + strand at 4072.187 kb on + strand at 4072.222 kb on + strand at 4072.263 kb on - strand at 4072.285 kb on - strand at 4072.285 kb on - strand at 4072.298 kb on + strand at 4072.391 kb on + strand, within Shewana3_3403 at 4072.411 kb on - strand, within Shewana3_3403 at 4072.564 kb on - strand, within Shewana3_3403 at 4072.607 kb on - strand, within Shewana3_3403 at 4072.706 kb on - strand, within Shewana3_3403 at 4072.720 kb on + strand, within Shewana3_3403 at 4072.739 kb on - strand, within Shewana3_3403 at 4072.798 kb on + strand, within Shewana3_3403 at 4072.798 kb on + strand, within Shewana3_3403 at 4072.805 kb on + strand, within Shewana3_3403 at 4072.806 kb on - strand, within Shewana3_3403 at 4072.850 kb on - strand, within Shewana3_3403 at 4072.976 kb on + strand at 4073.042 kb on - strand at 4073.127 kb on + strand at 4073.264 kb on + strand, within Shewana3_3404 at 4073.395 kb on + strand, within Shewana3_3404 at 4073.576 kb on + strand at 4073.695 kb on + strand at 4073.804 kb on + strand at 4073.953 kb on + strand, within Shewana3_3405 at 4073.953 kb on + strand, within Shewana3_3405 at 4073.968 kb on + strand, within Shewana3_3405 at 4073.983 kb on + strand, within Shewana3_3405 at 4073.986 kb on - strand, within Shewana3_3405 at 4073.991 kb on - strand, within Shewana3_3405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,071,355 - Shewana3_3402 0.45 +0.6 4,071,434 + Shewana3_3402 0.51 +0.1 4,071,523 - Shewana3_3402 0.58 +0.1 4,071,563 - Shewana3_3402 0.61 -1.0 4,071,767 - Shewana3_3402 0.77 +0.0 4,072,022 + +0.2 4,072,030 - +1.4 4,072,040 - -0.3 4,072,054 - +0.8 4,072,099 - -0.3 4,072,136 + +0.2 4,072,148 + +0.6 4,072,187 + +0.7 4,072,222 + +0.1 4,072,263 - +1.0 4,072,285 - -0.7 4,072,285 - -0.6 4,072,298 + +0.0 4,072,391 + Shewana3_3403 0.14 +0.8 4,072,411 - Shewana3_3403 0.17 -1.4 4,072,564 - Shewana3_3403 0.38 +0.3 4,072,607 - Shewana3_3403 0.45 -0.8 4,072,706 - Shewana3_3403 0.59 -0.5 4,072,720 + Shewana3_3403 0.61 -0.2 4,072,739 - Shewana3_3403 0.63 -1.9 4,072,798 + Shewana3_3403 0.72 +0.1 4,072,798 + Shewana3_3403 0.72 -0.3 4,072,805 + Shewana3_3403 0.73 +0.1 4,072,806 - Shewana3_3403 0.73 -1.1 4,072,850 - Shewana3_3403 0.79 -0.1 4,072,976 + +0.6 4,073,042 - -1.1 4,073,127 + -1.4 4,073,264 + Shewana3_3404 0.23 -4.4 4,073,395 + Shewana3_3404 0.53 -2.6 4,073,576 + -2.3 4,073,695 + -1.1 4,073,804 + +0.2 4,073,953 + Shewana3_3405 0.24 -0.3 4,073,953 + Shewana3_3405 0.24 +0.0 4,073,968 + Shewana3_3405 0.25 +0.7 4,073,983 + Shewana3_3405 0.27 +0.2 4,073,986 - Shewana3_3405 0.27 -1.0 4,073,991 - Shewana3_3405 0.28 +0.5
Or see this region's nucleotide sequence