Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3403

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3402 and Shewana3_3403 are separated by 231 nucleotidesShewana3_3403 and Shewana3_3404 are separated by 162 nucleotidesShewana3_3404 and Shewana3_3405 are separated by 135 nucleotides Shewana3_3402: Shewana3_3402 - aminopeptidase B (RefSeq), at 4,070,769 to 4,072,061 _3402 Shewana3_3403: Shewana3_3403 - sugar fermentation stimulation protein A (RefSeq), at 4,072,293 to 4,072,997 _3403 Shewana3_3404: Shewana3_3404 - TraR/DksA family transcriptional regulator (RefSeq), at 4,073,160 to 4,073,603 _3404 Shewana3_3405: Shewana3_3405 - glutamyl-tRNA synthetase, class Ic (RefSeq), at 4,073,739 to 4,074,638 _3405 Position (kb) 4072 4073Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4071.355 kb on - strand, within Shewana3_3402at 4071.434 kb on + strand, within Shewana3_3402at 4071.523 kb on - strand, within Shewana3_3402at 4071.563 kb on - strand, within Shewana3_3402at 4071.767 kb on - strand, within Shewana3_3402at 4072.022 kb on + strandat 4072.030 kb on - strandat 4072.040 kb on - strandat 4072.054 kb on - strandat 4072.099 kb on - strandat 4072.136 kb on + strandat 4072.148 kb on + strandat 4072.187 kb on + strandat 4072.222 kb on + strandat 4072.263 kb on - strandat 4072.285 kb on - strandat 4072.285 kb on - strandat 4072.298 kb on + strandat 4072.391 kb on + strand, within Shewana3_3403at 4072.411 kb on - strand, within Shewana3_3403at 4072.564 kb on - strand, within Shewana3_3403at 4072.607 kb on - strand, within Shewana3_3403at 4072.706 kb on - strand, within Shewana3_3403at 4072.720 kb on + strand, within Shewana3_3403at 4072.739 kb on - strand, within Shewana3_3403at 4072.798 kb on + strand, within Shewana3_3403at 4072.798 kb on + strand, within Shewana3_3403at 4072.805 kb on + strand, within Shewana3_3403at 4072.806 kb on - strand, within Shewana3_3403at 4072.850 kb on - strand, within Shewana3_3403at 4072.976 kb on + strandat 4073.042 kb on - strandat 4073.127 kb on + strandat 4073.264 kb on + strand, within Shewana3_3404at 4073.395 kb on + strand, within Shewana3_3404at 4073.576 kb on + strandat 4073.695 kb on + strandat 4073.804 kb on + strandat 4073.953 kb on + strand, within Shewana3_3405at 4073.953 kb on + strand, within Shewana3_3405at 4073.968 kb on + strand, within Shewana3_3405at 4073.983 kb on + strand, within Shewana3_3405at 4073.986 kb on - strand, within Shewana3_3405at 4073.991 kb on - strand, within Shewana3_3405

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,071,355 - Shewana3_3402 0.45 +0.6
4,071,434 + Shewana3_3402 0.51 +0.1
4,071,523 - Shewana3_3402 0.58 +0.1
4,071,563 - Shewana3_3402 0.61 -1.0
4,071,767 - Shewana3_3402 0.77 +0.0
4,072,022 + +0.2
4,072,030 - +1.4
4,072,040 - -0.3
4,072,054 - +0.8
4,072,099 - -0.3
4,072,136 + +0.2
4,072,148 + +0.6
4,072,187 + +0.7
4,072,222 + +0.1
4,072,263 - +1.0
4,072,285 - -0.7
4,072,285 - -0.6
4,072,298 + +0.0
4,072,391 + Shewana3_3403 0.14 +0.8
4,072,411 - Shewana3_3403 0.17 -1.4
4,072,564 - Shewana3_3403 0.38 +0.3
4,072,607 - Shewana3_3403 0.45 -0.8
4,072,706 - Shewana3_3403 0.59 -0.5
4,072,720 + Shewana3_3403 0.61 -0.2
4,072,739 - Shewana3_3403 0.63 -1.9
4,072,798 + Shewana3_3403 0.72 +0.1
4,072,798 + Shewana3_3403 0.72 -0.3
4,072,805 + Shewana3_3403 0.73 +0.1
4,072,806 - Shewana3_3403 0.73 -1.1
4,072,850 - Shewana3_3403 0.79 -0.1
4,072,976 + +0.6
4,073,042 - -1.1
4,073,127 + -1.4
4,073,264 + Shewana3_3404 0.23 -4.4
4,073,395 + Shewana3_3404 0.53 -2.6
4,073,576 + -2.3
4,073,695 + -1.1
4,073,804 + +0.2
4,073,953 + Shewana3_3405 0.24 -0.3
4,073,953 + Shewana3_3405 0.24 +0.0
4,073,968 + Shewana3_3405 0.25 +0.7
4,073,983 + Shewana3_3405 0.27 +0.2
4,073,986 - Shewana3_3405 0.27 -1.0
4,073,991 - Shewana3_3405 0.28 +0.5

Or see this region's nucleotide sequence