Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3346

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3344 and Shewana3_3345 are separated by 10 nucleotidesShewana3_3345 and Shewana3_3346 are separated by 67 nucleotidesShewana3_3346 and Shewana3_3347 overlap by 8 nucleotidesShewana3_3347 and Shewana3_3348 are separated by 166 nucleotides Shewana3_3344: Shewana3_3344 - cytochrome c, putative (RefSeq), at 4,013,434 to 4,014,258 _3344 Shewana3_3345: Shewana3_3345 - hypothetical protein (RefSeq), at 4,014,269 to 4,014,793 _3345 Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409 _3346 Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151 _3347 Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787 _3348 Position (kb) 4014 4015 4016Strain fitness (log2 ratio) -2 -1 0 1at 4013.901 kb on + strand, within Shewana3_3344at 4013.976 kb on + strand, within Shewana3_3344at 4014.008 kb on + strand, within Shewana3_3344at 4014.067 kb on + strand, within Shewana3_3344at 4014.067 kb on + strand, within Shewana3_3344at 4014.070 kb on - strand, within Shewana3_3344at 4014.075 kb on - strand, within Shewana3_3344at 4014.085 kb on + strand, within Shewana3_3344at 4014.242 kb on - strandat 4014.288 kb on + strandat 4014.311 kb on + strandat 4014.311 kb on + strandat 4014.357 kb on - strand, within Shewana3_3345at 4014.393 kb on + strand, within Shewana3_3345at 4014.415 kb on - strand, within Shewana3_3345at 4014.566 kb on - strand, within Shewana3_3345at 4014.920 kb on + strand, within Shewana3_3346at 4015.132 kb on + strand, within Shewana3_3346at 4015.151 kb on + strand, within Shewana3_3346at 4015.327 kb on - strand, within Shewana3_3346at 4015.589 kb on + strand, within Shewana3_3347at 4015.601 kb on + strand, within Shewana3_3347at 4015.756 kb on - strand, within Shewana3_3347at 4015.999 kb on + strand, within Shewana3_3347at 4016.007 kb on - strand, within Shewana3_3347

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,013,901 + Shewana3_3344 0.57 +0.9
4,013,976 + Shewana3_3344 0.66 -0.7
4,014,008 + Shewana3_3344 0.70 -0.1
4,014,067 + Shewana3_3344 0.77 +0.8
4,014,067 + Shewana3_3344 0.77 -0.6
4,014,070 - Shewana3_3344 0.77 -1.9
4,014,075 - Shewana3_3344 0.78 +0.3
4,014,085 + Shewana3_3344 0.79 -0.2
4,014,242 - +0.7
4,014,288 + +0.4
4,014,311 + +0.5
4,014,311 + +0.1
4,014,357 - Shewana3_3345 0.17 +0.6
4,014,393 + Shewana3_3345 0.24 +0.3
4,014,415 - Shewana3_3345 0.28 -0.2
4,014,566 - Shewana3_3345 0.57 -0.3
4,014,920 + Shewana3_3346 0.11 +0.4
4,015,132 + Shewana3_3346 0.49 +0.5
4,015,151 + Shewana3_3346 0.53 +1.3
4,015,327 - Shewana3_3346 0.85 -0.2
4,015,589 + Shewana3_3347 0.25 -0.6
4,015,601 + Shewana3_3347 0.27 +0.3
4,015,756 - Shewana3_3347 0.47 -0.3
4,015,999 + Shewana3_3347 0.80 +0.4
4,016,007 - Shewana3_3347 0.81 +0.2

Or see this region's nucleotide sequence