Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3344 and Shewana3_3345 are separated by 10 nucleotides Shewana3_3345 and Shewana3_3346 are separated by 67 nucleotides Shewana3_3346 and Shewana3_3347 overlap by 8 nucleotides Shewana3_3347 and Shewana3_3348 are separated by 166 nucleotides
Shewana3_3344: Shewana3_3344 - cytochrome c, putative (RefSeq), at 4,013,434 to 4,014,258
_3344
Shewana3_3345: Shewana3_3345 - hypothetical protein (RefSeq), at 4,014,269 to 4,014,793
_3345
Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409
_3346
Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151
_3347
Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787
_3348
Position (kb)
4014
4015
4016 Strain fitness (log2 ratio)
-2
-1
0
1 at 4013.901 kb on + strand, within Shewana3_3344 at 4013.976 kb on + strand, within Shewana3_3344 at 4014.008 kb on + strand, within Shewana3_3344 at 4014.067 kb on + strand, within Shewana3_3344 at 4014.067 kb on + strand, within Shewana3_3344 at 4014.070 kb on - strand, within Shewana3_3344 at 4014.075 kb on - strand, within Shewana3_3344 at 4014.085 kb on + strand, within Shewana3_3344 at 4014.242 kb on - strand at 4014.288 kb on + strand at 4014.311 kb on + strand at 4014.311 kb on + strand at 4014.357 kb on - strand, within Shewana3_3345 at 4014.393 kb on + strand, within Shewana3_3345 at 4014.415 kb on - strand, within Shewana3_3345 at 4014.566 kb on - strand, within Shewana3_3345 at 4014.920 kb on + strand, within Shewana3_3346 at 4015.132 kb on + strand, within Shewana3_3346 at 4015.151 kb on + strand, within Shewana3_3346 at 4015.327 kb on - strand, within Shewana3_3346 at 4015.589 kb on + strand, within Shewana3_3347 at 4015.601 kb on + strand, within Shewana3_3347 at 4015.756 kb on - strand, within Shewana3_3347 at 4015.999 kb on + strand, within Shewana3_3347 at 4016.007 kb on - strand, within Shewana3_3347
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,013,901 + Shewana3_3344 0.57 +0.9 4,013,976 + Shewana3_3344 0.66 -0.7 4,014,008 + Shewana3_3344 0.70 -0.1 4,014,067 + Shewana3_3344 0.77 +0.8 4,014,067 + Shewana3_3344 0.77 -0.6 4,014,070 - Shewana3_3344 0.77 -1.9 4,014,075 - Shewana3_3344 0.78 +0.3 4,014,085 + Shewana3_3344 0.79 -0.2 4,014,242 - +0.7 4,014,288 + +0.4 4,014,311 + +0.5 4,014,311 + +0.1 4,014,357 - Shewana3_3345 0.17 +0.6 4,014,393 + Shewana3_3345 0.24 +0.3 4,014,415 - Shewana3_3345 0.28 -0.2 4,014,566 - Shewana3_3345 0.57 -0.3 4,014,920 + Shewana3_3346 0.11 +0.4 4,015,132 + Shewana3_3346 0.49 +0.5 4,015,151 + Shewana3_3346 0.53 +1.3 4,015,327 - Shewana3_3346 0.85 -0.2 4,015,589 + Shewana3_3347 0.25 -0.6 4,015,601 + Shewana3_3347 0.27 +0.3 4,015,756 - Shewana3_3347 0.47 -0.3 4,015,999 + Shewana3_3347 0.80 +0.4 4,016,007 - Shewana3_3347 0.81 +0.2
Or see this region's nucleotide sequence