Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3294 and Shewana3_3295 are separated by 391 nucleotides Shewana3_3295 and lysS are separated by 102 nucleotides lysS and Shewana3_3297 are separated by 29 nucleotides
Shewana3_3294: Shewana3_3294 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,943,374 to 3,943,877
_3294
Shewana3_3295: Shewana3_3295 - hypothetical protein (RefSeq), at 3,944,269 to 3,944,712
_3295
Shewana3_3296: lysS - lysyl-tRNA synthetase (RefSeq), at 3,944,815 to 3,946,317
lysS
Shewana3_3297: Shewana3_3297 - peptide chain release factor 2 (RefSeq), at 3,946,347 to 3,947,405
_3297
Position (kb)
3944
3945
3946
3947 Strain fitness (log2 ratio)
-1
0
1 at 3943.840 kb on + strand at 3943.845 kb on + strand at 3943.848 kb on - strand at 3943.851 kb on + strand at 3943.853 kb on - strand at 3943.859 kb on - strand at 3943.976 kb on + strand at 3943.994 kb on - strand at 3944.044 kb on + strand at 3944.156 kb on + strand at 3944.156 kb on + strand at 3944.156 kb on + strand at 3944.158 kb on - strand at 3944.163 kb on - strand at 3944.164 kb on - strand at 3944.164 kb on - strand at 3944.191 kb on + strand at 3944.199 kb on - strand at 3944.221 kb on - strand at 3944.223 kb on + strand at 3944.223 kb on + strand at 3944.317 kb on - strand, within Shewana3_3295 at 3944.317 kb on - strand, within Shewana3_3295 at 3944.327 kb on + strand, within Shewana3_3295 at 3944.335 kb on + strand, within Shewana3_3295 at 3944.394 kb on + strand, within Shewana3_3295 at 3944.428 kb on - strand, within Shewana3_3295 at 3944.554 kb on - strand, within Shewana3_3295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,943,840 + -0.7 3,943,845 + -0.2 3,943,848 - +1.0 3,943,851 + +0.5 3,943,853 - +0.5 3,943,859 - +1.2 3,943,976 + -0.8 3,943,994 - -0.8 3,944,044 + +0.4 3,944,156 + +0.8 3,944,156 + -1.4 3,944,156 + +0.6 3,944,158 - -0.0 3,944,163 - -0.6 3,944,164 - -1.2 3,944,164 - -0.6 3,944,191 + +0.4 3,944,199 - +0.4 3,944,221 - +0.6 3,944,223 + +0.2 3,944,223 + +0.4 3,944,317 - Shewana3_3295 0.11 +0.3 3,944,317 - Shewana3_3295 0.11 +0.9 3,944,327 + Shewana3_3295 0.13 +0.2 3,944,335 + Shewana3_3295 0.15 +0.3 3,944,394 + Shewana3_3295 0.28 +0.2 3,944,428 - Shewana3_3295 0.36 +0.7 3,944,554 - Shewana3_3295 0.64 +0.9
Or see this region's nucleotide sequence