Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3153 and Shewana3_3154 are separated by 213 nucleotides Shewana3_3154 and Shewana3_3155 are separated by 255 nucleotides Shewana3_3155 and Shewana3_3156 overlap by 1 nucleotides
Shewana3_3153: Shewana3_3153 - von Willebrand factor, type A (RefSeq), at 3,780,541 to 3,782,382
_3153
Shewana3_3154: Shewana3_3154 - putative sulfate transporter YchM (RefSeq), at 3,782,596 to 3,784,368
_3154
Shewana3_3155: Shewana3_3155 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 3,784,624 to 3,785,115
_3155
Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212
_3156
Position (kb)
3782
3783
3784
3785 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 3781.730 kb on + strand, within Shewana3_3153 at 3781.730 kb on + strand, within Shewana3_3153 at 3781.738 kb on - strand, within Shewana3_3153 at 3781.748 kb on - strand, within Shewana3_3153 at 3781.758 kb on - strand, within Shewana3_3153 at 3781.814 kb on + strand, within Shewana3_3153 at 3781.905 kb on - strand, within Shewana3_3153 at 3781.930 kb on + strand, within Shewana3_3153 at 3781.938 kb on - strand, within Shewana3_3153 at 3782.051 kb on + strand, within Shewana3_3153 at 3782.300 kb on - strand at 3782.392 kb on - strand at 3782.580 kb on + strand at 3782.985 kb on - strand, within Shewana3_3154 at 3783.091 kb on - strand, within Shewana3_3154 at 3783.133 kb on + strand, within Shewana3_3154 at 3783.204 kb on - strand, within Shewana3_3154 at 3783.448 kb on + strand, within Shewana3_3154 at 3783.506 kb on + strand, within Shewana3_3154 at 3783.570 kb on + strand, within Shewana3_3154 at 3783.682 kb on + strand, within Shewana3_3154 at 3783.699 kb on - strand, within Shewana3_3154 at 3783.715 kb on - strand, within Shewana3_3154 at 3783.727 kb on + strand, within Shewana3_3154 at 3783.805 kb on + strand, within Shewana3_3154 at 3783.806 kb on - strand, within Shewana3_3154 at 3783.930 kb on - strand, within Shewana3_3154 at 3784.151 kb on + strand, within Shewana3_3154 at 3784.182 kb on + strand, within Shewana3_3154 at 3784.570 kb on - strand at 3784.570 kb on - strand at 3784.786 kb on - strand, within Shewana3_3155 at 3784.870 kb on + strand, within Shewana3_3155 at 3784.875 kb on + strand, within Shewana3_3155 at 3784.878 kb on - strand, within Shewana3_3155 at 3785.083 kb on + strand at 3785.083 kb on + strand at 3785.100 kb on + strand at 3785.175 kb on + strand at 3785.315 kb on - strand, within Shewana3_3156
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,781,730 + Shewana3_3153 0.65 -0.9 3,781,730 + Shewana3_3153 0.65 +0.0 3,781,738 - Shewana3_3153 0.65 +0.7 3,781,748 - Shewana3_3153 0.66 -0.3 3,781,758 - Shewana3_3153 0.66 +0.8 3,781,814 + Shewana3_3153 0.69 +0.1 3,781,905 - Shewana3_3153 0.74 +0.1 3,781,930 + Shewana3_3153 0.75 +0.0 3,781,938 - Shewana3_3153 0.76 -0.1 3,782,051 + Shewana3_3153 0.82 -0.3 3,782,300 - +0.0 3,782,392 - +0.4 3,782,580 + +0.3 3,782,985 - Shewana3_3154 0.22 +0.8 3,783,091 - Shewana3_3154 0.28 +0.7 3,783,133 + Shewana3_3154 0.30 +0.5 3,783,204 - Shewana3_3154 0.34 +0.1 3,783,448 + Shewana3_3154 0.48 +1.0 3,783,506 + Shewana3_3154 0.51 +0.3 3,783,570 + Shewana3_3154 0.55 +1.0 3,783,682 + Shewana3_3154 0.61 -0.4 3,783,699 - Shewana3_3154 0.62 +0.6 3,783,715 - Shewana3_3154 0.63 -0.3 3,783,727 + Shewana3_3154 0.64 -0.8 3,783,805 + Shewana3_3154 0.68 +0.9 3,783,806 - Shewana3_3154 0.68 +0.1 3,783,930 - Shewana3_3154 0.75 -0.2 3,784,151 + Shewana3_3154 0.88 +0.7 3,784,182 + Shewana3_3154 0.89 -5.3 3,784,570 - -5.8 3,784,570 - -6.8 3,784,786 - Shewana3_3155 0.33 -5.8 3,784,870 + Shewana3_3155 0.50 -6.3 3,784,875 + Shewana3_3155 0.51 -5.4 3,784,878 - Shewana3_3155 0.52 -3.2 3,785,083 + -3.7 3,785,083 + -5.8 3,785,100 + -5.0 3,785,175 + -4.8 3,785,315 - Shewana3_3156 0.18 -3.4
Or see this region's nucleotide sequence