Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3022

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3020 and Shewana3_3021 are separated by 65 nucleotidesShewana3_3021 and acpS are separated by 170 nucleotidesacpS and Shewana3_3023 overlap by 1 nucleotidesShewana3_3023 and Shewana3_3024 are separated by 89 nucleotides Shewana3_3020: Shewana3_3020 - hypothetical protein (RefSeq), at 3,626,407 to 3,627,678 _3020 Shewana3_3021: Shewana3_3021 - hypothetical protein (RefSeq), at 3,627,744 to 3,628,280 _3021 Shewana3_3022: acpS - 4'-phosphopantetheinyl transferase (RefSeq), at 3,628,451 to 3,628,834 acpS Shewana3_3023: Shewana3_3023 - pyridoxine 5'-phosphate synthase (RefSeq), at 3,628,834 to 3,629,571 _3023 Shewana3_3024: Shewana3_3024 - DNA repair protein RecO (RefSeq), at 3,629,661 to 3,630,362 _3024 Position (kb) 3628 3629Strain fitness (log2 ratio) -1 0 1 2at 3627.540 kb on - strand, within Shewana3_3020at 3627.813 kb on - strand, within Shewana3_3021at 3628.073 kb on - strand, within Shewana3_3021at 3628.544 kb on - strand, within acpSat 3628.589 kb on - strand, within acpSat 3628.621 kb on - strand, within acpSat 3628.646 kb on + strand, within acpSat 3628.778 kb on - strand, within acpSat 3629.629 kb on - strandat 3629.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,627,540 - Shewana3_3020 0.89 -1.2
3,627,813 - Shewana3_3021 0.13 +0.0
3,628,073 - Shewana3_3021 0.61 -0.7
3,628,544 - acpS Shewana3_3022 0.24 +2.1
3,628,589 - acpS Shewana3_3022 0.36 +1.4
3,628,621 - acpS Shewana3_3022 0.44 +0.5
3,628,646 + acpS Shewana3_3022 0.51 +2.4
3,628,778 - acpS Shewana3_3022 0.85 +1.6
3,629,629 - -1.7
3,629,629 - -0.5

Or see this region's nucleotide sequence