Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2112

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2110 and Shewana3_2111 are separated by 110 nucleotidesShewana3_2111 and Shewana3_2112 are separated by 10 nucleotidesShewana3_2112 and Shewana3_2113 are separated by 19 nucleotidesShewana3_2113 and Shewana3_2114 are separated by 8 nucleotidesShewana3_2114 and Shewana3_2115 are separated by 55 nucleotides Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813 _2110 Shewana3_2111: Shewana3_2111 - hypothetical protein (RefSeq), at 2,534,924 to 2,535,403 _2111 Shewana3_2112: Shewana3_2112 - heavy metal translocating P-type ATPase (RefSeq), at 2,535,414 to 2,537,825 _2112 Shewana3_2113: Shewana3_2113 - cytochrome oxidase maturation protein, cbb3-type (RefSeq), at 2,537,845 to 2,538,045 _2113 Shewana3_2114: Shewana3_2114 - hypothetical protein (RefSeq), at 2,538,054 to 2,538,746 _2114 Shewana3_2115: Shewana3_2115 - fumarate/nitrate reduction transcriptional regulator (RefSeq), at 2,538,802 to 2,539,554 _2115 Position (kb) 2535 2536 2537 2538Strain fitness (log2 ratio) -2 -1 0 1at 2534.528 kb on + strand, within Shewana3_2110at 2534.596 kb on + strand, within Shewana3_2110at 2535.108 kb on - strand, within Shewana3_2111at 2535.166 kb on - strand, within Shewana3_2111at 2535.168 kb on - strand, within Shewana3_2111at 2535.168 kb on - strand, within Shewana3_2111at 2535.290 kb on - strand, within Shewana3_2111at 2535.299 kb on + strand, within Shewana3_2111at 2535.687 kb on + strand, within Shewana3_2112at 2535.756 kb on - strand, within Shewana3_2112at 2536.380 kb on + strand, within Shewana3_2112at 2536.567 kb on + strand, within Shewana3_2112at 2536.568 kb on + strand, within Shewana3_2112at 2536.722 kb on + strand, within Shewana3_2112at 2536.722 kb on + strand, within Shewana3_2112at 2536.722 kb on + strand, within Shewana3_2112at 2536.730 kb on - strand, within Shewana3_2112at 2536.856 kb on - strand, within Shewana3_2112at 2537.286 kb on - strand, within Shewana3_2112at 2537.377 kb on + strand, within Shewana3_2112at 2537.433 kb on + strand, within Shewana3_2112at 2537.553 kb on + strand, within Shewana3_2112at 2537.636 kb on + strandat 2538.031 kb on + strandat 2538.163 kb on + strand, within Shewana3_2114at 2538.387 kb on + strand, within Shewana3_2114at 2538.516 kb on - strand, within Shewana3_2114at 2538.536 kb on - strand, within Shewana3_2114at 2538.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,534,528 + Shewana3_2110 0.70 -2.0
2,534,596 + Shewana3_2110 0.78 -2.4
2,535,108 - Shewana3_2111 0.38 -1.8
2,535,166 - Shewana3_2111 0.50 -2.2
2,535,168 - Shewana3_2111 0.51 -2.5
2,535,168 - Shewana3_2111 0.51 -1.6
2,535,290 - Shewana3_2111 0.76 -0.7
2,535,299 + Shewana3_2111 0.78 -1.9
2,535,687 + Shewana3_2112 0.11 -1.3
2,535,756 - Shewana3_2112 0.14 -1.0
2,536,380 + Shewana3_2112 0.40 -1.8
2,536,567 + Shewana3_2112 0.48 -1.3
2,536,568 + Shewana3_2112 0.48 -1.7
2,536,722 + Shewana3_2112 0.54 -1.2
2,536,722 + Shewana3_2112 0.54 -1.6
2,536,722 + Shewana3_2112 0.54 -2.0
2,536,730 - Shewana3_2112 0.55 -2.4
2,536,856 - Shewana3_2112 0.60 -1.9
2,537,286 - Shewana3_2112 0.78 -2.5
2,537,377 + Shewana3_2112 0.81 -1.1
2,537,433 + Shewana3_2112 0.84 -1.7
2,537,553 + Shewana3_2112 0.89 -1.1
2,537,636 + -0.3
2,538,031 + -0.7
2,538,163 + Shewana3_2114 0.16 -1.2
2,538,387 + Shewana3_2114 0.48 -1.6
2,538,516 - Shewana3_2114 0.67 -2.6
2,538,536 - Shewana3_2114 0.70 -0.8
2,538,748 - -0.3

Or see this region's nucleotide sequence