Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2105

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2104 and Shewana3_2105 are separated by 450 nucleotidesShewana3_2105 and Shewana3_2106 are separated by 108 nucleotidesShewana3_2106 and Shewana3_2107 are separated by 223 nucleotides Shewana3_2104: Shewana3_2104 - phage integrase family protein (RefSeq), at 2,527,441 to 2,528,736 _2104 Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764 _2105 Shewana3_2106: Shewana3_2106 - hypothetical protein (RefSeq), at 2,530,873 to 2,531,358 _2106 Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018 _2107 Position (kb) 2529 2530 2531Strain fitness (log2 ratio) -3 -2 -1 0 1at 2528.526 kb on - strand, within Shewana3_2104at 2528.902 kb on - strandat 2528.969 kb on - strandat 2529.309 kb on + strandat 2529.382 kb on - strand, within Shewana3_2105at 2529.384 kb on + strand, within Shewana3_2105at 2529.418 kb on + strand, within Shewana3_2105at 2529.471 kb on + strand, within Shewana3_2105at 2529.546 kb on - strand, within Shewana3_2105at 2529.732 kb on - strand, within Shewana3_2105at 2530.172 kb on + strand, within Shewana3_2105at 2530.222 kb on - strand, within Shewana3_2105at 2530.325 kb on - strand, within Shewana3_2105at 2531.099 kb on - strand, within Shewana3_2106at 2531.522 kb on + strandat 2531.522 kb on + strandat 2531.612 kb on + strandat 2531.717 kb on + strandat 2531.717 kb on + strandat 2531.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,528,526 - Shewana3_2104 0.84 +0.3
2,528,902 - -0.4
2,528,969 - -1.0
2,529,309 + -1.0
2,529,382 - Shewana3_2105 0.12 -0.0
2,529,384 + Shewana3_2105 0.12 -0.9
2,529,418 + Shewana3_2105 0.15 -1.0
2,529,471 + Shewana3_2105 0.18 +0.7
2,529,546 - Shewana3_2105 0.23 -1.0
2,529,732 - Shewana3_2105 0.35 +0.2
2,530,172 + Shewana3_2105 0.62 +0.3
2,530,222 - Shewana3_2105 0.66 -0.6
2,530,325 - Shewana3_2105 0.72 -0.7
2,531,099 - Shewana3_2106 0.47 -2.0
2,531,522 + -2.4
2,531,522 + -0.5
2,531,612 + -1.5
2,531,717 + -2.9
2,531,717 + -3.3
2,531,725 - -3.0

Or see this region's nucleotide sequence