Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1976

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1975 and cmk are separated by 183 nucleotidescmk and rpsA are separated by 102 nucleotides Shewana3_1975: Shewana3_1975 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,353,638 to 2,354,918 _1975 Shewana3_1976: cmk - cytidylate kinase (RefSeq), at 2,355,102 to 2,355,794 cmk Shewana3_1977: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,355,897 to 2,357,564 rpsA Position (kb) 2355 2356Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2354.168 kb on + strand, within Shewana3_1975at 2354.176 kb on - strand, within Shewana3_1975at 2354.200 kb on - strand, within Shewana3_1975at 2354.648 kb on - strand, within Shewana3_1975at 2354.686 kb on + strand, within Shewana3_1975at 2355.021 kb on + strandat 2355.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,354,168 + Shewana3_1975 0.41 -5.1
2,354,176 - Shewana3_1975 0.42 -3.3
2,354,200 - Shewana3_1975 0.44 -4.3
2,354,648 - Shewana3_1975 0.79 -5.5
2,354,686 + Shewana3_1975 0.82 -3.0
2,355,021 + -1.1
2,355,029 - +0.3

Or see this region's nucleotide sequence