Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1946 and Shewana3_1947 overlap by 26 nucleotides Shewana3_1947 and Shewana3_1948 overlap by 1 nucleotides Shewana3_1948 and Shewana3_1949 are separated by 211 nucleotides
Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701
_1946
Shewana3_1947: Shewana3_1947 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,315,676 to 2,316,620
_1947
Shewana3_1948: Shewana3_1948 - hypothetical protein (RefSeq), at 2,316,620 to 2,318,128
_1948
Shewana3_1949: Shewana3_1949 - hypothetical protein (RefSeq), at 2,318,340 to 2,319,161
_1949
Position (kb)
2316
2317
2318
2319 Strain fitness (log2 ratio)
-2
-1
0
1 at 2315.642 kb on - strand at 2315.896 kb on - strand, within Shewana3_1947 at 2315.920 kb on - strand, within Shewana3_1947 at 2315.999 kb on - strand, within Shewana3_1947 at 2316.259 kb on - strand, within Shewana3_1947 at 2316.469 kb on - strand, within Shewana3_1947 at 2316.665 kb on + strand at 2316.751 kb on - strand at 2316.910 kb on - strand, within Shewana3_1948 at 2316.985 kb on + strand at 2317.101 kb on - strand, within Shewana3_1948 at 2317.696 kb on + strand, within Shewana3_1948 at 2317.722 kb on + strand, within Shewana3_1948 at 2317.730 kb on - strand, within Shewana3_1948 at 2317.820 kb on + strand, within Shewana3_1948 at 2317.885 kb on - strand, within Shewana3_1948 at 2318.006 kb on + strand at 2318.014 kb on - strand at 2318.248 kb on + strand at 2318.248 kb on + strand at 2318.248 kb on + strand at 2318.248 kb on + strand at 2318.252 kb on - strand at 2318.374 kb on + strand at 2318.382 kb on - strand at 2318.382 kb on - strand at 2318.392 kb on - strand at 2318.544 kb on + strand, within Shewana3_1949 at 2318.554 kb on + strand, within Shewana3_1949 at 2318.554 kb on + strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.718 kb on - strand, within Shewana3_1949 at 2318.718 kb on - strand, within Shewana3_1949 at 2318.867 kb on + strand, within Shewana3_1949 at 2318.875 kb on - strand, within Shewana3_1949 at 2318.964 kb on + strand, within Shewana3_1949 at 2319.068 kb on - strand, within Shewana3_1949 at 2319.077 kb on + strand, within Shewana3_1949
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,315,642 - -0.0 2,315,896 - Shewana3_1947 0.23 -0.4 2,315,920 - Shewana3_1947 0.26 +0.4 2,315,999 - Shewana3_1947 0.34 -0.1 2,316,259 - Shewana3_1947 0.62 -1.3 2,316,469 - Shewana3_1947 0.84 -0.6 2,316,665 + -0.6 2,316,751 - -0.6 2,316,910 - Shewana3_1948 0.19 +0.2 2,316,985 + -0.2 2,317,101 - Shewana3_1948 0.32 +0.2 2,317,696 + Shewana3_1948 0.71 +0.5 2,317,722 + Shewana3_1948 0.73 -0.6 2,317,730 - Shewana3_1948 0.74 -0.1 2,317,820 + Shewana3_1948 0.80 +0.7 2,317,885 - Shewana3_1948 0.84 +0.5 2,318,006 + +0.7 2,318,014 - +0.5 2,318,248 + -0.1 2,318,248 + +0.4 2,318,248 + +1.0 2,318,248 + -0.5 2,318,252 - -0.6 2,318,374 + -0.5 2,318,382 - -0.8 2,318,382 - +0.2 2,318,392 - -0.7 2,318,544 + Shewana3_1949 0.25 -0.1 2,318,554 + Shewana3_1949 0.26 +1.5 2,318,554 + Shewana3_1949 0.26 -0.5 2,318,562 - Shewana3_1949 0.27 +0.3 2,318,562 - Shewana3_1949 0.27 +0.3 2,318,562 - Shewana3_1949 0.27 -0.5 2,318,562 - Shewana3_1949 0.27 -1.9 2,318,562 - Shewana3_1949 0.27 -0.3 2,318,562 - Shewana3_1949 0.27 +0.1 2,318,718 - Shewana3_1949 0.46 +0.2 2,318,718 - Shewana3_1949 0.46 +0.7 2,318,867 + Shewana3_1949 0.64 -0.8 2,318,875 - Shewana3_1949 0.65 -0.6 2,318,964 + Shewana3_1949 0.76 -0.6 2,319,068 - Shewana3_1949 0.89 -1.7 2,319,077 + Shewana3_1949 0.90 +0.3
Or see this region's nucleotide sequence