Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1732 and Shewana3_1733 are separated by 221 nucleotides Shewana3_1733 and Shewana3_1734 are separated by 150 nucleotides Shewana3_1734 and Shewana3_1735 are separated by 181 nucleotides
Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322
_1732
Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975
_1733
Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190
_1734
Shewana3_1735: Shewana3_1735 - hypothetical protein (RefSeq), at 2,043,372 to 2,044,184
_1735
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2041.179 kb on + strand, within Shewana3_1732 at 2041.511 kb on - strand at 2041.680 kb on + strand, within Shewana3_1733 at 2041.829 kb on + strand, within Shewana3_1733 at 2041.847 kb on + strand, within Shewana3_1733 at 2041.932 kb on - strand at 2041.990 kb on - strand at 2042.168 kb on - strand at 2042.421 kb on - strand, within Shewana3_1734 at 2042.651 kb on + strand, within Shewana3_1734 at 2042.691 kb on - strand, within Shewana3_1734 at 2042.710 kb on + strand, within Shewana3_1734 at 2042.951 kb on + strand, within Shewana3_1734 at 2042.978 kb on + strand, within Shewana3_1734 at 2043.032 kb on + strand, within Shewana3_1734 at 2043.120 kb on + strand at 2043.143 kb on - strand at 2043.254 kb on + strand at 2043.256 kb on + strand at 2043.256 kb on + strand at 2043.264 kb on - strand at 2043.264 kb on - strand at 2043.363 kb on - strand at 2043.438 kb on - strand at 2043.512 kb on + strand, within Shewana3_1735 at 2043.512 kb on + strand, within Shewana3_1735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,041,179 + Shewana3_1732 0.78 +0.9 2,041,511 - +0.0 2,041,680 + Shewana3_1733 0.31 -0.1 2,041,829 + Shewana3_1733 0.66 -0.1 2,041,847 + Shewana3_1733 0.70 -0.3 2,041,932 - +0.1 2,041,990 - -0.5 2,042,168 - -4.5 2,042,421 - Shewana3_1734 0.28 -3.3 2,042,651 + Shewana3_1734 0.49 -2.4 2,042,691 - Shewana3_1734 0.53 -4.1 2,042,710 + Shewana3_1734 0.55 -3.6 2,042,951 + Shewana3_1734 0.77 -3.7 2,042,978 + Shewana3_1734 0.80 -2.3 2,043,032 + Shewana3_1734 0.85 -3.6 2,043,120 + -2.8 2,043,143 - -2.5 2,043,254 + -3.3 2,043,256 + -1.0 2,043,256 + -2.6 2,043,264 - -0.8 2,043,264 - -1.6 2,043,363 - -0.1 2,043,438 - -0.1 2,043,512 + Shewana3_1735 0.17 +0.5 2,043,512 + Shewana3_1735 0.17 -2.7
Or see this region's nucleotide sequence