Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1734

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1732 and Shewana3_1733 are separated by 221 nucleotidesShewana3_1733 and Shewana3_1734 are separated by 150 nucleotidesShewana3_1734 and Shewana3_1735 are separated by 181 nucleotides Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322 _1732 Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975 _1733 Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190 _1734 Shewana3_1735: Shewana3_1735 - hypothetical protein (RefSeq), at 2,043,372 to 2,044,184 _1735 Position (kb) 2042 2043 2044Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2041.179 kb on + strand, within Shewana3_1732at 2041.511 kb on - strandat 2041.680 kb on + strand, within Shewana3_1733at 2041.829 kb on + strand, within Shewana3_1733at 2041.847 kb on + strand, within Shewana3_1733at 2041.932 kb on - strandat 2041.990 kb on - strandat 2042.168 kb on - strandat 2042.421 kb on - strand, within Shewana3_1734at 2042.651 kb on + strand, within Shewana3_1734at 2042.691 kb on - strand, within Shewana3_1734at 2042.710 kb on + strand, within Shewana3_1734at 2042.951 kb on + strand, within Shewana3_1734at 2042.978 kb on + strand, within Shewana3_1734at 2043.032 kb on + strand, within Shewana3_1734at 2043.120 kb on + strandat 2043.143 kb on - strandat 2043.254 kb on + strandat 2043.256 kb on + strandat 2043.256 kb on + strandat 2043.264 kb on - strandat 2043.264 kb on - strandat 2043.363 kb on - strandat 2043.438 kb on - strandat 2043.512 kb on + strand, within Shewana3_1735at 2043.512 kb on + strand, within Shewana3_1735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,041,179 + Shewana3_1732 0.78 +0.9
2,041,511 - +0.0
2,041,680 + Shewana3_1733 0.31 -0.1
2,041,829 + Shewana3_1733 0.66 -0.1
2,041,847 + Shewana3_1733 0.70 -0.3
2,041,932 - +0.1
2,041,990 - -0.5
2,042,168 - -4.5
2,042,421 - Shewana3_1734 0.28 -3.3
2,042,651 + Shewana3_1734 0.49 -2.4
2,042,691 - Shewana3_1734 0.53 -4.1
2,042,710 + Shewana3_1734 0.55 -3.6
2,042,951 + Shewana3_1734 0.77 -3.7
2,042,978 + Shewana3_1734 0.80 -2.3
2,043,032 + Shewana3_1734 0.85 -3.6
2,043,120 + -2.8
2,043,143 - -2.5
2,043,254 + -3.3
2,043,256 + -1.0
2,043,256 + -2.6
2,043,264 - -0.8
2,043,264 - -1.6
2,043,363 - -0.1
2,043,438 - -0.1
2,043,512 + Shewana3_1735 0.17 +0.5
2,043,512 + Shewana3_1735 0.17 -2.7

Or see this region's nucleotide sequence