Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1728

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1727 and Shewana3_1728 are separated by 88 nucleotidesShewana3_1728 and Shewana3_1729 are separated by 283 nucleotides Shewana3_1727: Shewana3_1727 - Ig domain-containing protein (RefSeq), at 2,030,311 to 2,033,985 _1727 Shewana3_1728: Shewana3_1728 - Succinylarginine dihydrolase (EC 3.5.3.23) (from data), at 2,034,074 to 2,035,408 _1728 Shewana3_1729: Shewana3_1729 - DNA topoisomerase I (RefSeq), at 2,035,692 to 2,038,376 _1729 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2033.086 kb on - strandat 2033.123 kb on + strand, within Shewana3_1727at 2033.124 kb on - strand, within Shewana3_1727at 2033.141 kb on - strand, within Shewana3_1727at 2033.214 kb on + strand, within Shewana3_1727at 2033.222 kb on - strand, within Shewana3_1727at 2033.264 kb on + strand, within Shewana3_1727at 2033.397 kb on - strand, within Shewana3_1727at 2033.482 kb on + strand, within Shewana3_1727at 2033.490 kb on - strand, within Shewana3_1727at 2033.583 kb on + strand, within Shewana3_1727at 2033.583 kb on + strand, within Shewana3_1727at 2033.629 kb on + strandat 2033.630 kb on + strandat 2033.670 kb on + strandat 2033.796 kb on + strandat 2033.909 kb on - strandat 2033.993 kb on + strandat 2034.065 kb on + strandat 2034.070 kb on + strandat 2034.088 kb on + strandat 2034.096 kb on - strandat 2034.132 kb on - strandat 2034.170 kb on + strandat 2034.464 kb on - strand, within Shewana3_1728at 2034.636 kb on - strand, within Shewana3_1728at 2034.848 kb on + strand, within Shewana3_1728at 2034.970 kb on + strand, within Shewana3_1728at 2034.985 kb on + strand, within Shewana3_1728at 2035.113 kb on + strand, within Shewana3_1728at 2035.196 kb on + strand, within Shewana3_1728at 2035.196 kb on + strand, within Shewana3_1728at 2035.237 kb on - strand, within Shewana3_1728at 2035.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,033,086 - +1.7
2,033,123 + Shewana3_1727 0.77 -0.5
2,033,124 - Shewana3_1727 0.77 -0.8
2,033,141 - Shewana3_1727 0.77 +0.2
2,033,214 + Shewana3_1727 0.79 +0.6
2,033,222 - Shewana3_1727 0.79 +0.5
2,033,264 + Shewana3_1727 0.80 +0.4
2,033,397 - Shewana3_1727 0.84 -0.4
2,033,482 + Shewana3_1727 0.86 +0.6
2,033,490 - Shewana3_1727 0.87 +1.1
2,033,583 + Shewana3_1727 0.89 +0.0
2,033,583 + Shewana3_1727 0.89 -0.5
2,033,629 + -0.1
2,033,630 + -0.6
2,033,670 + -1.0
2,033,796 + +0.3
2,033,909 - +0.7
2,033,993 + -0.4
2,034,065 + +0.4
2,034,070 + +0.2
2,034,088 + -5.0
2,034,096 - -3.3
2,034,132 - -4.6
2,034,170 + -4.3
2,034,464 - Shewana3_1728 0.29 -5.1
2,034,636 - Shewana3_1728 0.42 -3.3
2,034,848 + Shewana3_1728 0.58 -6.1
2,034,970 + Shewana3_1728 0.67 -3.7
2,034,985 + Shewana3_1728 0.68 -4.7
2,035,113 + Shewana3_1728 0.78 -4.8
2,035,196 + Shewana3_1728 0.84 -5.8
2,035,196 + Shewana3_1728 0.84 -5.1
2,035,237 - Shewana3_1728 0.87 -2.4
2,035,510 - -0.8

Or see this region's nucleotide sequence