Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1376

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1375 and Shewana3_1376 are separated by 240 nucleotidesShewana3_1376 and Shewana3_1377 are separated by 39 nucleotides Shewana3_1375: Shewana3_1375 - polysaccharide export protein (RefSeq), at 1,588,920 to 1,591,433 _1375 Shewana3_1376: Shewana3_1376 - lipopolysaccharide biosynthesis (RefSeq), at 1,591,674 to 1,592,630 _1376 Shewana3_1377: Shewana3_1377 - sugar transferase (RefSeq), at 1,592,670 to 1,593,659 _1377 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1591.532 kb on - strandat 1591.572 kb on - strandat 1591.737 kb on + strandat 1592.210 kb on - strand, within Shewana3_1376at 1592.631 kb on + strandat 1592.668 kb on - strandat 1592.885 kb on + strand, within Shewana3_1377at 1592.922 kb on + strand, within Shewana3_1377at 1593.007 kb on + strand, within Shewana3_1377at 1593.007 kb on + strand, within Shewana3_1377at 1593.009 kb on + strand, within Shewana3_1377at 1593.125 kb on + strand, within Shewana3_1377at 1593.125 kb on + strand, within Shewana3_1377at 1593.125 kb on + strand, within Shewana3_1377at 1593.139 kb on + strand, within Shewana3_1377at 1593.155 kb on + strand, within Shewana3_1377at 1593.184 kb on + strand, within Shewana3_1377at 1593.184 kb on + strand, within Shewana3_1377at 1593.214 kb on + strand, within Shewana3_1377at 1593.214 kb on + strand, within Shewana3_1377at 1593.219 kb on + strand, within Shewana3_1377at 1593.219 kb on + strand, within Shewana3_1377at 1593.219 kb on + strand, within Shewana3_1377at 1593.280 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.491 kb on + strand, within Shewana3_1377at 1593.493 kb on + strand, within Shewana3_1377at 1593.501 kb on + strand, within Shewana3_1377at 1593.529 kb on + strand, within Shewana3_1377

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,591,532 - +0.6
1,591,572 - +0.7
1,591,737 + +0.5
1,592,210 - Shewana3_1376 0.56 -4.9
1,592,631 + +0.1
1,592,668 - +1.7
1,592,885 + Shewana3_1377 0.22 -1.8
1,592,922 + Shewana3_1377 0.25 -2.6
1,593,007 + Shewana3_1377 0.34 -1.0
1,593,007 + Shewana3_1377 0.34 -2.5
1,593,009 + Shewana3_1377 0.34 -2.6
1,593,125 + Shewana3_1377 0.46 -1.9
1,593,125 + Shewana3_1377 0.46 +0.5
1,593,125 + Shewana3_1377 0.46 -1.5
1,593,139 + Shewana3_1377 0.47 -2.0
1,593,155 + Shewana3_1377 0.49 -1.5
1,593,184 + Shewana3_1377 0.52 -1.4
1,593,184 + Shewana3_1377 0.52 -2.0
1,593,214 + Shewana3_1377 0.55 -2.2
1,593,214 + Shewana3_1377 0.55 -2.8
1,593,219 + Shewana3_1377 0.55 -1.8
1,593,219 + Shewana3_1377 0.55 -1.5
1,593,219 + Shewana3_1377 0.55 -1.7
1,593,280 + Shewana3_1377 0.62 -2.8
1,593,483 + Shewana3_1377 0.82 -1.2
1,593,483 + Shewana3_1377 0.82 -1.6
1,593,483 + Shewana3_1377 0.82 -1.3
1,593,483 + Shewana3_1377 0.82 -3.0
1,593,483 + Shewana3_1377 0.82 -1.6
1,593,491 + Shewana3_1377 0.83 -2.4
1,593,493 + Shewana3_1377 0.83 -1.7
1,593,501 + Shewana3_1377 0.84 -1.0
1,593,529 + Shewana3_1377 0.87 -1.5

Or see this region's nucleotide sequence