Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiH and Shewana3_0709 are separated by 70 nucleotides Shewana3_0709 and Shewana3_0710 are separated by 13 nucleotides Shewana3_0710 and Shewana3_0711 are separated by 12 nucleotides
Shewana3_0708: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 822,821 to 824,260
thiH
Shewana3_0709: Shewana3_0709 - formate dehydrogenase gamma subunit (RefSeq), at 824,331 to 825,014
_0709
Shewana3_0710: Shewana3_0710 - iron hydrogenase, small subunit (RefSeq), at 825,028 to 825,348
_0710
Shewana3_0711: Shewana3_0711 - response regulator receiver protein (RefSeq), at 825,361 to 826,593
_0711
Position (kb) 824
825
826 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 823.448 kb on - strand, within thiH at 823.499 kb on - strand, within thiH at 823.562 kb on - strand, within thiH at 823.566 kb on + strand, within thiH at 823.574 kb on - strand, within thiH at 823.574 kb on - strand, within thiH at 823.645 kb on - strand, within thiH at 823.692 kb on - strand, within thiH at 823.692 kb on - strand, within thiH at 823.748 kb on + strand, within thiH at 823.753 kb on + strand, within thiH at 823.761 kb on - strand, within thiH at 824.096 kb on + strand, within thiH at 824.104 kb on - strand, within thiH at 824.454 kb on - strand, within Shewana3_0709 at 824.581 kb on - strand, within Shewana3_0709 at 824.726 kb on + strand, within Shewana3_0709 at 824.798 kb on - strand, within Shewana3_0709 at 824.855 kb on + strand, within Shewana3_0709 at 824.855 kb on + strand, within Shewana3_0709 at 824.863 kb on - strand, within Shewana3_0709 at 825.111 kb on - strand, within Shewana3_0710 at 825.253 kb on + strand, within Shewana3_0710 at 825.436 kb on + strand at 825.444 kb on - strand at 825.452 kb on - strand at 825.489 kb on + strand, within Shewana3_0711 at 825.525 kb on - strand, within Shewana3_0711 at 825.560 kb on + strand, within Shewana3_0711 at 825.920 kb on + strand, within Shewana3_0711
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 823,448 - thiH Shewana3_0708 0.44 +0.9 823,499 - thiH Shewana3_0708 0.47 +0.7 823,562 - thiH Shewana3_0708 0.51 -0.5 823,566 + thiH Shewana3_0708 0.52 +0.3 823,574 - thiH Shewana3_0708 0.52 -1.0 823,574 - thiH Shewana3_0708 0.52 -0.5 823,645 - thiH Shewana3_0708 0.57 -0.2 823,692 - thiH Shewana3_0708 0.60 +0.2 823,692 - thiH Shewana3_0708 0.60 +0.4 823,748 + thiH Shewana3_0708 0.64 +0.2 823,753 + thiH Shewana3_0708 0.65 +0.4 823,761 - thiH Shewana3_0708 0.65 -0.7 824,096 + thiH Shewana3_0708 0.89 -1.1 824,104 - thiH Shewana3_0708 0.89 -1.9 824,454 - Shewana3_0709 0.18 +0.2 824,581 - Shewana3_0709 0.37 -0.8 824,726 + Shewana3_0709 0.58 -0.3 824,798 - Shewana3_0709 0.68 +0.6 824,855 + Shewana3_0709 0.77 -0.2 824,855 + Shewana3_0709 0.77 +0.3 824,863 - Shewana3_0709 0.78 -1.6 825,111 - Shewana3_0710 0.26 +0.4 825,253 + Shewana3_0710 0.70 -4.2 825,436 + -0.7 825,444 - -0.2 825,452 - +0.4 825,489 + Shewana3_0711 0.10 -1.0 825,525 - Shewana3_0711 0.13 +0.6 825,560 + Shewana3_0711 0.16 +0.5 825,920 + Shewana3_0711 0.45 -0.5
Or see this region's nucleotide sequence