Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0650

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0649 and Shewana3_0650 are separated by 352 nucleotidesShewana3_0650 and Shewana3_0651 are separated by 586 nucleotides Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868 _0649 Shewana3_0650: Shewana3_0650 - two-component response regulator (RefSeq), at 769,221 to 769,937 _0650 Shewana3_0651: Shewana3_0651 - hypothetical protein (RefSeq), at 770,524 to 770,958 _0651 Position (kb) 769 770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 768.261 kb on + strand, within Shewana3_0649at 768.274 kb on - strand, within Shewana3_0649at 768.387 kb on + strand, within Shewana3_0649at 768.683 kb on + strandat 768.729 kb on - strandat 768.829 kb on + strandat 768.883 kb on + strandat 768.920 kb on + strandat 768.922 kb on + strandat 768.945 kb on - strandat 768.966 kb on + strandat 768.973 kb on + strandat 769.016 kb on - strandat 769.084 kb on + strandat 769.258 kb on - strandat 769.433 kb on - strand, within Shewana3_0650at 769.433 kb on - strand, within Shewana3_0650at 769.487 kb on - strand, within Shewana3_0650at 769.538 kb on - strand, within Shewana3_0650at 769.580 kb on - strand, within Shewana3_0650at 769.589 kb on - strand, within Shewana3_0650at 769.821 kb on - strand, within Shewana3_0650at 769.821 kb on - strand, within Shewana3_0650at 769.821 kb on - strand, within Shewana3_0650at 769.842 kb on - strand, within Shewana3_0650at 769.842 kb on - strand, within Shewana3_0650at 770.232 kb on - strandat 770.267 kb on + strandat 770.349 kb on + strandat 770.397 kb on + strandat 770.496 kb on - strandat 770.636 kb on + strand, within Shewana3_0651at 770.646 kb on + strand, within Shewana3_0651at 770.897 kb on + strand, within Shewana3_0651at 770.897 kb on + strand, within Shewana3_0651at 770.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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768,261 + Shewana3_0649 0.73 -1.3
768,274 - Shewana3_0649 0.74 -0.9
768,387 + Shewana3_0649 0.79 +0.7
768,683 + +0.2
768,729 - -0.1
768,829 + -0.1
768,883 + +0.3
768,920 + +0.3
768,922 + +0.2
768,945 - +0.3
768,966 + -1.6
768,973 + +0.5
769,016 - -0.2
769,084 + +0.5
769,258 - -3.7
769,433 - Shewana3_0650 0.30 -1.4
769,433 - Shewana3_0650 0.30 -1.8
769,487 - Shewana3_0650 0.37 -3.0
769,538 - Shewana3_0650 0.44 -3.4
769,580 - Shewana3_0650 0.50 -3.3
769,589 - Shewana3_0650 0.51 -1.8
769,821 - Shewana3_0650 0.84 -2.5
769,821 - Shewana3_0650 0.84 -2.5
769,821 - Shewana3_0650 0.84 -1.8
769,842 - Shewana3_0650 0.87 -2.0
769,842 - Shewana3_0650 0.87 -0.8
770,232 - -3.3
770,267 + -0.8
770,349 + -4.0
770,397 + -2.0
770,496 - -0.1
770,636 + Shewana3_0651 0.26 -0.2
770,646 + Shewana3_0651 0.28 -0.7
770,897 + Shewana3_0651 0.86 -0.3
770,897 + Shewana3_0651 0.86 +0.6
770,917 + -0.8

Or see this region's nucleotide sequence