Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0633 and Shewana3_0634 are separated by 62 nucleotides Shewana3_0634 and Shewana3_0635 overlap by 11 nucleotides Shewana3_0635 and Shewana3_0636 are separated by 254 nucleotides
Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981
_0633
Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138
_0634
Shewana3_0635: Shewana3_0635 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 748,128 to 748,883
_0635
Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126
_0636
Position (kb) 747
748
749 Strain fitness (log2 ratio) -2
-1
0
1 at 746.131 kb on + strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.282 kb on - strand, within Shewana3_0633 at 746.332 kb on - strand, within Shewana3_0633 at 746.491 kb on - strand, within Shewana3_0633 at 746.717 kb on + strand at 746.801 kb on - strand at 746.898 kb on + strand at 746.904 kb on + strand at 746.945 kb on - strand at 746.998 kb on - strand at 747.125 kb on + strand at 747.330 kb on - strand, within Shewana3_0634 at 747.428 kb on + strand, within Shewana3_0634 at 747.448 kb on + strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.494 kb on + strand, within Shewana3_0634 at 747.815 kb on + strand, within Shewana3_0634 at 747.922 kb on + strand, within Shewana3_0634 at 748.052 kb on + strand at 748.052 kb on + strand at 748.055 kb on - strand at 748.081 kb on - strand at 748.083 kb on + strand at 748.083 kb on + strand at 748.258 kb on + strand, within Shewana3_0635 at 748.485 kb on - strand, within Shewana3_0635 at 748.595 kb on + strand, within Shewana3_0635 at 748.595 kb on + strand, within Shewana3_0635 at 748.603 kb on - strand, within Shewana3_0635 at 748.710 kb on - strand, within Shewana3_0635 at 748.722 kb on - strand, within Shewana3_0635 at 748.797 kb on + strand, within Shewana3_0635 at 748.860 kb on + strand at 748.944 kb on + strand at 748.987 kb on - strand at 749.020 kb on + strand at 749.125 kb on + strand at 749.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 746,131 + Shewana3_0633 0.73 -0.2 746,139 - Shewana3_0633 0.73 -0.3 746,139 - Shewana3_0633 0.73 -2.3 746,139 - Shewana3_0633 0.73 +0.1 746,139 - Shewana3_0633 0.73 +0.4 746,197 - Shewana3_0633 0.75 +0.2 746,197 - Shewana3_0633 0.75 -0.1 746,282 - Shewana3_0633 0.77 +0.0 746,332 - Shewana3_0633 0.79 -1.4 746,491 - Shewana3_0633 0.84 +0.2 746,717 + -0.8 746,801 - -0.9 746,898 + +0.3 746,904 + +1.1 746,945 - +0.7 746,998 - -2.7 747,125 + +0.6 747,330 - Shewana3_0634 0.26 -0.8 747,428 + Shewana3_0634 0.35 -0.6 747,448 + Shewana3_0634 0.37 +0.3 747,456 - Shewana3_0634 0.38 +0.2 747,456 - Shewana3_0634 0.38 +0.2 747,494 + Shewana3_0634 0.41 +0.1 747,815 + Shewana3_0634 0.70 +0.6 747,922 + Shewana3_0634 0.80 -0.6 748,052 + +0.2 748,052 + +0.4 748,055 - +0.0 748,081 - +0.3 748,083 + -1.4 748,083 + +0.2 748,258 + Shewana3_0635 0.17 +0.5 748,485 - Shewana3_0635 0.47 -1.2 748,595 + Shewana3_0635 0.62 +0.0 748,595 + Shewana3_0635 0.62 -1.6 748,603 - Shewana3_0635 0.63 -1.1 748,710 - Shewana3_0635 0.77 +0.3 748,722 - Shewana3_0635 0.79 -0.1 748,797 + Shewana3_0635 0.88 -0.7 748,860 + +0.4 748,944 + -0.1 748,987 - -1.4 749,020 + -0.6 749,125 + -0.9 749,133 - -0.7
Or see this region's nucleotide sequence