Strain Fitness in Shewanella amazonensis SB2B around Sama_2364

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2362 and Sama_2363 are separated by 11 nucleotidesSama_2363 and hisS are separated by 36 nucleotideshisS and ispG are separated by 141 nucleotides Sama_2362: Sama_2362 - outer membrane protein assembly complex subunit YfgL (RefSeq), at 2,838,800 to 2,839,987 _2362 Sama_2363: Sama_2363 - hypothetical protein (RefSeq), at 2,839,999 to 2,840,619 _2363 Sama_2364: hisS - histidyl-tRNA synthetase (RefSeq), at 2,840,656 to 2,841,930 hisS Sama_2365: ispG - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq), at 2,842,072 to 2,843,190 ispG Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -1 0 1at 2842.035 kb on - strandat 2842.058 kb on - strandat 2842.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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2,842,035 - -0.3
2,842,058 - +0.5
2,842,058 - -1.1

Or see this region's nucleotide sequence