Strain Fitness in Shewanella amazonensis SB2B around Sama_1809

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1808 and Sama_1809 are separated by 357 nucleotidesSama_1809 and Sama_1810 are separated by 19 nucleotides Sama_1808: Sama_1808 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,200,983 to 2,201,996 _1808 Sama_1809: Sama_1809 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq), at 2,202,354 to 2,202,998 _1809 Sama_1810: Sama_1810 - phosphogluconate dehydratase (RefSeq), at 2,203,018 to 2,204,844 _1810 Position (kb) 2202 2203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2201.994 kb on + strandat 2202.066 kb on - strandat 2202.128 kb on - strandat 2202.128 kb on - strandat 2202.128 kb on - strandat 2202.138 kb on + strandat 2202.200 kb on + strandat 2202.200 kb on + strandat 2202.200 kb on + strandat 2202.201 kb on - strandat 2202.213 kb on + strandat 2202.220 kb on + strandat 2202.254 kb on - strandat 2202.351 kb on - strandat 2202.351 kb on - strandat 2202.356 kb on - strandat 2203.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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2,201,994 + +1.6
2,202,066 - +0.2
2,202,128 - -0.3
2,202,128 - -0.8
2,202,128 - -0.7
2,202,138 + -0.1
2,202,200 + +0.9
2,202,200 + -0.3
2,202,200 + -0.2
2,202,201 - +2.9
2,202,213 + -0.1
2,202,220 + +0.2
2,202,254 - -0.4
2,202,351 - -2.8
2,202,351 - -0.1
2,202,356 - +0.9
2,203,023 - +0.3

Or see this region's nucleotide sequence