Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrD and ubiA are separated by 79 nucleotides ubiA and Sama_0421 overlap by 50 nucleotides
Sama_0419: uvrD - DNA-dependent helicase II (RefSeq), at 515,732 to 517,897
uvrD
Sama_0420: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 517,977 to 518,849
ubiA
Sama_0421: Sama_0421 - TMAO reductase system periplasmic protein TorT (RefSeq), at 518,800 to 519,885
_0421
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 516.984 kb on + strand, within uvrD at 516.984 kb on + strand, within uvrD at 516.984 kb on + strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 517.004 kb on - strand, within uvrD at 517.004 kb on - strand, within uvrD at 517.016 kb on - strand, within uvrD at 517.016 kb on - strand, within uvrD at 517.201 kb on + strand, within uvrD at 517.202 kb on - strand, within uvrD at 517.202 kb on - strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.468 kb on - strand, within uvrD at 517.468 kb on - strand, within uvrD at 517.478 kb on - strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.537 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.563 kb on - strand, within uvrD at 517.563 kb on - strand, within uvrD at 517.564 kb on + strand, within uvrD at 517.564 kb on + strand, within uvrD at 517.564 kb on + strand, within uvrD at 517.565 kb on - strand, within uvrD at 517.565 kb on - strand, within uvrD at 517.565 kb on - strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.572 kb on - strand, within uvrD at 517.572 kb on - strand, within uvrD at 517.572 kb on - strand, within uvrD at 517.588 kb on + strand, within uvrD at 517.588 kb on + strand, within uvrD at 517.589 kb on - strand, within uvrD at 517.589 kb on - strand, within uvrD at 517.589 kb on - strand, within uvrD at 517.592 kb on + strand, within uvrD at 517.592 kb on + strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.607 kb on + strand, within uvrD at 517.608 kb on - strand, within uvrD at 517.608 kb on - strand, within uvrD at 517.627 kb on + strand, within uvrD at 517.649 kb on + strand, within uvrD at 517.649 kb on + strand, within uvrD at 517.649 kb on + strand, within uvrD at 517.650 kb on - strand, within uvrD at 517.650 kb on - strand, within uvrD at 517.650 kb on - strand, within uvrD at 517.669 kb on + strand, within uvrD at 517.730 kb on - strand at 517.730 kb on - strand at 517.744 kb on - strand at 517.771 kb on + strand at 517.772 kb on - strand at 517.799 kb on + strand at 517.799 kb on + strand at 517.799 kb on + strand at 517.799 kb on + strand at 517.800 kb on - strand at 517.827 kb on + strand at 517.827 kb on + strand at 517.828 kb on - strand at 517.828 kb on - strand at 517.875 kb on - strand at 517.875 kb on - strand at 517.935 kb on + strand at 518.007 kb on + strand at 518.007 kb on + strand at 518.010 kb on + strand at 518.847 kb on + strand at 518.847 kb on + strand at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.915 kb on - strand, within Sama_0421 at 518.915 kb on - strand, within Sama_0421 at 518.947 kb on + strand, within Sama_0421 at 518.948 kb on - strand, within Sama_0421 at 519.035 kb on - strand, within Sama_0421 at 519.035 kb on - strand, within Sama_0421 at 519.085 kb on + strand, within Sama_0421 at 519.085 kb on + strand, within Sama_0421 at 519.085 kb on + strand, within Sama_0421 at 519.086 kb on - strand, within Sama_0421 at 519.086 kb on - strand, within Sama_0421 at 519.104 kb on + strand, within Sama_0421 at 519.105 kb on - strand, within Sama_0421 at 519.112 kb on + strand, within Sama_0421 at 519.112 kb on + strand, within Sama_0421 at 519.143 kb on + strand, within Sama_0421 at 519.144 kb on - strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.254 kb on + strand, within Sama_0421 at 519.254 kb on + strand, within Sama_0421 at 519.254 kb on + strand, within Sama_0421 at 519.276 kb on + strand, within Sama_0421 at 519.276 kb on + strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.289 kb on + strand, within Sama_0421 at 519.289 kb on + strand, within Sama_0421 at 519.289 kb on + strand, within Sama_0421 at 519.290 kb on - strand, within Sama_0421 at 519.290 kb on - strand, within Sama_0421 at 519.358 kb on + strand, within Sama_0421 at 519.358 kb on + strand, within Sama_0421 at 519.358 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.412 kb on - strand, within Sama_0421 at 519.418 kb on - strand, within Sama_0421 at 519.430 kb on + strand, within Sama_0421 at 519.430 kb on + strand, within Sama_0421 at 519.431 kb on - strand, within Sama_0421 at 519.554 kb on + strand, within Sama_0421 at 519.554 kb on + strand, within Sama_0421 at 519.555 kb on - strand, within Sama_0421 at 519.632 kb on + strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.646 kb on + strand, within Sama_0421 at 519.698 kb on + strand, within Sama_0421 at 519.699 kb on - strand, within Sama_0421 at 519.699 kb on - strand, within Sama_0421 at 519.699 kb on - strand, within Sama_0421 at 519.732 kb on + strand, within Sama_0421 at 519.732 kb on + strand, within Sama_0421 at 519.732 kb on + strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.767 kb on + strand, within Sama_0421 at 519.767 kb on + strand, within Sama_0421 at 519.767 kb on + strand, within Sama_0421 at 519.768 kb on - strand, within Sama_0421 at 519.789 kb on + strand at 519.790 kb on - strand at 519.834 kb on + strand at 519.834 kb on + strand at 519.834 kb on + strand at 519.835 kb on - strand at 519.835 kb on - strand at 519.843 kb on + strand at 519.844 kb on - strand at 519.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 516,984 + uvrD Sama_0419 0.58 -1.2 516,984 + uvrD Sama_0419 0.58 +1.0 516,984 + uvrD Sama_0419 0.58 -0.0 516,985 - uvrD Sama_0419 0.58 -2.5 516,985 - uvrD Sama_0419 0.58 -1.6 516,985 - uvrD Sama_0419 0.58 +0.3 516,985 - uvrD Sama_0419 0.58 +0.6 516,985 - uvrD Sama_0419 0.58 -1.4 516,985 - uvrD Sama_0419 0.58 -0.8 517,004 - uvrD Sama_0419 0.59 -1.3 517,004 - uvrD Sama_0419 0.59 -1.6 517,016 - uvrD Sama_0419 0.59 -2.2 517,016 - uvrD Sama_0419 0.59 -0.9 517,201 + uvrD Sama_0419 0.68 -0.3 517,202 - uvrD Sama_0419 0.68 +2.0 517,202 - uvrD Sama_0419 0.68 -1.1 517,211 + uvrD Sama_0419 0.68 +0.9 517,211 + uvrD Sama_0419 0.68 +1.0 517,211 + uvrD Sama_0419 0.68 -1.1 517,211 + uvrD Sama_0419 0.68 -2.1 517,212 - uvrD Sama_0419 0.68 -1.6 517,212 - uvrD Sama_0419 0.68 -1.3 517,212 - uvrD Sama_0419 0.68 -1.2 517,212 - uvrD Sama_0419 0.68 -0.7 517,212 - uvrD Sama_0419 0.68 -0.7 517,467 + uvrD Sama_0419 0.80 -0.6 517,467 + uvrD Sama_0419 0.80 +0.8 517,467 + uvrD Sama_0419 0.80 +0.3 517,467 + uvrD Sama_0419 0.80 +0.8 517,467 + uvrD Sama_0419 0.80 -1.2 517,468 - uvrD Sama_0419 0.80 +0.6 517,468 - uvrD Sama_0419 0.80 +0.4 517,478 - uvrD Sama_0419 0.81 +0.3 517,529 + uvrD Sama_0419 0.83 -2.2 517,529 + uvrD Sama_0419 0.83 -1.2 517,529 + uvrD Sama_0419 0.83 -0.6 517,529 + uvrD Sama_0419 0.83 -2.3 517,529 + uvrD Sama_0419 0.83 +0.2 517,529 + uvrD Sama_0419 0.83 +1.6 517,529 + uvrD Sama_0419 0.83 -0.0 517,529 + uvrD Sama_0419 0.83 -1.6 517,530 - uvrD Sama_0419 0.83 -0.3 517,530 - uvrD Sama_0419 0.83 -0.4 517,530 - uvrD Sama_0419 0.83 -1.2 517,530 - uvrD Sama_0419 0.83 +4.0 517,530 - uvrD Sama_0419 0.83 +0.6 517,530 - uvrD Sama_0419 0.83 -0.2 517,530 - uvrD Sama_0419 0.83 -0.9 517,537 + uvrD Sama_0419 0.83 -0.0 517,562 + uvrD Sama_0419 0.84 -1.1 517,562 + uvrD Sama_0419 0.84 -1.0 517,562 + uvrD Sama_0419 0.84 +0.6 517,562 + uvrD Sama_0419 0.84 -1.2 517,563 - uvrD Sama_0419 0.85 -1.9 517,563 - uvrD Sama_0419 0.85 -1.4 517,564 + uvrD Sama_0419 0.85 -0.7 517,564 + uvrD Sama_0419 0.85 -0.7 517,564 + uvrD Sama_0419 0.85 -0.5 517,565 - uvrD Sama_0419 0.85 +2.6 517,565 - uvrD Sama_0419 0.85 -0.9 517,565 - uvrD Sama_0419 0.85 -1.0 517,571 + uvrD Sama_0419 0.85 -0.6 517,571 + uvrD Sama_0419 0.85 -1.7 517,571 + uvrD Sama_0419 0.85 -0.9 517,571 + uvrD Sama_0419 0.85 +0.4 517,571 + uvrD Sama_0419 0.85 -0.7 517,572 - uvrD Sama_0419 0.85 -0.3 517,572 - uvrD Sama_0419 0.85 +0.2 517,572 - uvrD Sama_0419 0.85 -0.0 517,588 + uvrD Sama_0419 0.86 +0.3 517,588 + uvrD Sama_0419 0.86 -0.4 517,589 - uvrD Sama_0419 0.86 -1.2 517,589 - uvrD Sama_0419 0.86 -0.6 517,589 - uvrD Sama_0419 0.86 -0.9 517,592 + uvrD Sama_0419 0.86 -0.7 517,592 + uvrD Sama_0419 0.86 -0.9 517,593 - uvrD Sama_0419 0.86 -2.7 517,593 - uvrD Sama_0419 0.86 +0.8 517,593 - uvrD Sama_0419 0.86 -0.7 517,593 - uvrD Sama_0419 0.86 -1.1 517,593 - uvrD Sama_0419 0.86 +0.3 517,593 - uvrD Sama_0419 0.86 -2.2 517,593 - uvrD Sama_0419 0.86 +0.3 517,607 + uvrD Sama_0419 0.87 +0.6 517,608 - uvrD Sama_0419 0.87 -1.6 517,608 - uvrD Sama_0419 0.87 -0.4 517,627 + uvrD Sama_0419 0.87 +0.3 517,649 + uvrD Sama_0419 0.89 -1.3 517,649 + uvrD Sama_0419 0.89 -0.2 517,649 + uvrD Sama_0419 0.89 -0.7 517,650 - uvrD Sama_0419 0.89 -1.3 517,650 - uvrD Sama_0419 0.89 +0.8 517,650 - uvrD Sama_0419 0.89 +4.1 517,669 + uvrD Sama_0419 0.89 -0.2 517,730 - -0.5 517,730 - -0.5 517,744 - -1.9 517,771 + +0.1 517,772 - -0.6 517,799 + -0.6 517,799 + -0.4 517,799 + -0.2 517,799 + -0.4 517,800 - +1.2 517,827 + +0.2 517,827 + -0.2 517,828 - -0.7 517,828 - -1.4 517,875 - -1.0 517,875 - +1.3 517,935 + +0.2 518,007 + -0.0 518,007 + -0.0 518,010 + +1.6 518,847 + -1.2 518,847 + -0.0 518,914 + Sama_0421 0.10 +0.6 518,914 + Sama_0421 0.10 -1.0 518,914 + Sama_0421 0.10 -0.4 518,914 + Sama_0421 0.10 -1.0 518,914 + Sama_0421 0.10 -1.0 518,915 - Sama_0421 0.11 -0.4 518,915 - Sama_0421 0.11 -0.7 518,947 + Sama_0421 0.14 +0.5 518,948 - Sama_0421 0.14 -0.4 519,035 - Sama_0421 0.22 -0.0 519,035 - Sama_0421 0.22 -0.9 519,085 + Sama_0421 0.26 -0.4 519,085 + Sama_0421 0.26 +0.5 519,085 + Sama_0421 0.26 +0.1 519,086 - Sama_0421 0.26 -0.2 519,086 - Sama_0421 0.26 +0.4 519,104 + Sama_0421 0.28 +0.3 519,105 - Sama_0421 0.28 +1.0 519,112 + Sama_0421 0.29 +1.0 519,112 + Sama_0421 0.29 +0.2 519,143 + Sama_0421 0.32 +0.5 519,144 - Sama_0421 0.32 +0.8 519,185 + Sama_0421 0.35 +0.1 519,185 + Sama_0421 0.35 -0.6 519,185 + Sama_0421 0.35 -1.2 519,185 + Sama_0421 0.35 -0.1 519,186 - Sama_0421 0.36 +1.2 519,186 - Sama_0421 0.36 +0.5 519,186 - Sama_0421 0.36 -0.1 519,186 - Sama_0421 0.36 +0.5 519,186 - Sama_0421 0.36 +0.1 519,254 + Sama_0421 0.42 -0.2 519,254 + Sama_0421 0.42 -0.4 519,254 + Sama_0421 0.42 -0.1 519,276 + Sama_0421 0.44 +2.3 519,276 + Sama_0421 0.44 +2.6 519,277 - Sama_0421 0.44 +1.6 519,277 - Sama_0421 0.44 +0.6 519,277 - Sama_0421 0.44 -0.7 519,277 - Sama_0421 0.44 +0.3 519,289 + Sama_0421 0.45 +0.3 519,289 + Sama_0421 0.45 -1.0 519,289 + Sama_0421 0.45 +0.4 519,290 - Sama_0421 0.45 -0.3 519,290 - Sama_0421 0.45 +0.6 519,358 + Sama_0421 0.51 +1.3 519,358 + Sama_0421 0.51 +0.8 519,358 + Sama_0421 0.51 -0.4 519,395 + Sama_0421 0.55 -0.3 519,395 + Sama_0421 0.55 -0.5 519,395 + Sama_0421 0.55 +1.9 519,395 + Sama_0421 0.55 +0.3 519,395 + Sama_0421 0.55 +0.6 519,395 + Sama_0421 0.55 -1.4 519,396 - Sama_0421 0.55 -1.4 519,396 - Sama_0421 0.55 -0.3 519,396 - Sama_0421 0.55 -0.2 519,396 - Sama_0421 0.55 +1.0 519,396 - Sama_0421 0.55 +0.6 519,396 - Sama_0421 0.55 -0.2 519,396 - Sama_0421 0.55 +1.3 519,396 - Sama_0421 0.55 -2.7 519,396 - Sama_0421 0.55 -0.0 519,396 - Sama_0421 0.55 +0.3 519,396 - Sama_0421 0.55 -0.1 519,396 - Sama_0421 0.55 -2.3 519,412 - Sama_0421 0.56 -0.4 519,418 - Sama_0421 0.57 -0.8 519,430 + Sama_0421 0.58 +0.4 519,430 + Sama_0421 0.58 -1.3 519,431 - Sama_0421 0.58 +0.6 519,554 + Sama_0421 0.69 +0.3 519,554 + Sama_0421 0.69 +0.6 519,555 - Sama_0421 0.70 +2.6 519,632 + Sama_0421 0.77 +0.2 519,633 - Sama_0421 0.77 +0.5 519,633 - Sama_0421 0.77 +0.1 519,633 - Sama_0421 0.77 -0.1 519,633 - Sama_0421 0.77 -2.2 519,633 - Sama_0421 0.77 +0.3 519,633 - Sama_0421 0.77 +0.3 519,646 + Sama_0421 0.78 +0.2 519,698 + Sama_0421 0.83 +1.0 519,699 - Sama_0421 0.83 -0.1 519,699 - Sama_0421 0.83 -0.5 519,699 - Sama_0421 0.83 +0.7 519,732 + Sama_0421 0.86 -2.0 519,732 + Sama_0421 0.86 -1.6 519,732 + Sama_0421 0.86 +0.4 519,733 - Sama_0421 0.86 -0.4 519,733 - Sama_0421 0.86 +0.6 519,733 - Sama_0421 0.86 -0.7 519,733 - Sama_0421 0.86 +0.1 519,767 + Sama_0421 0.89 +0.4 519,767 + Sama_0421 0.89 -0.8 519,767 + Sama_0421 0.89 +0.3 519,768 - Sama_0421 0.89 -0.4 519,789 + +0.3 519,790 - +0.1 519,834 + +1.6 519,834 + -0.1 519,834 + +0.8 519,835 - -0.7 519,835 - +2.9 519,843 + -0.0 519,844 - -1.7 519,844 - -0.3
Or see this region's nucleotide sequence