Strain Fitness in Shewanella amazonensis SB2B around Sama_R0022

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0362 and Sama_R0022 are separated by 513 nucleotidesSama_R0022 and Sama_R0023 are separated by 70 nucleotidesSama_R0023 and Sama_R0024 are separated by 119 nucleotidesSama_R0024 and Sama_R0025 are separated by 276 nucleotides Sama_0362: Sama_0362 - preprotein translocase subunit SecA (RefSeq), at 432,836 to 435,562 _0362 Sama_R0022: Sama_R0022 - 16S ribosomal RNA (RefSeq), at 436,076 to 437,612 _R0022 Sama_R0023: Sama_R0023 - tRNA-Ile (RefSeq), at 437,683 to 437,759 _R0023 Sama_R0024: Sama_R0024 - tRNA-Ala (RefSeq), at 437,879 to 437,954 _R0024 Sama_R0025: Sama_R0025 - 23S ribosomal RNA (RefSeq), at 438,231 to 441,144 _R0025 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 435.346 kb on - strandat 435.346 kb on - strandat 435.398 kb on + strandat 435.399 kb on - strandat 435.533 kb on + strandat 435.533 kb on + strandat 435.550 kb on + strandat 435.550 kb on + strandat 435.550 kb on + strandat 435.563 kb on + strandat 435.563 kb on + strandat 435.607 kb on + strandat 435.608 kb on - strandat 435.668 kb on + strandat 435.669 kb on - strandat 435.680 kb on + strandat 435.681 kb on - strandat 435.681 kb on - strandat 435.770 kb on + strandat 435.770 kb on + strandat 435.770 kb on + strandat 435.770 kb on + strandat 435.770 kb on + strandat 435.771 kb on - strandat 435.771 kb on - strandat 435.772 kb on + strandat 435.772 kb on + strandat 435.772 kb on + strandat 435.773 kb on - strandat 435.816 kb on + strandat 435.828 kb on + strandat 435.828 kb on + strandat 435.829 kb on - strandat 435.848 kb on - strandat 435.848 kb on - strandat 435.848 kb on - strandat 435.872 kb on + strandat 435.905 kb on - strandat 435.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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435,346 - +0.9
435,346 - +0.6
435,398 + -0.4
435,399 - -0.2
435,533 + +0.6
435,533 + -0.2
435,550 + -1.0
435,550 + +0.1
435,550 + +0.2
435,563 + +1.1
435,563 + -0.8
435,607 + -1.7
435,608 - -0.5
435,668 + +0.3
435,669 - +2.1
435,680 + -0.8
435,681 - -0.3
435,681 - +1.6
435,770 + +0.5
435,770 + -0.4
435,770 + -0.7
435,770 + +2.2
435,770 + -0.2
435,771 - +0.8
435,771 - -2.8
435,772 + -1.2
435,772 + -0.2
435,772 + +0.2
435,773 - +0.1
435,816 + +0.0
435,828 + +0.6
435,828 + -0.5
435,829 - +1.2
435,848 - -0.9
435,848 - +2.0
435,848 - -0.2
435,872 + -1.4
435,905 - +1.2
435,905 - +1.6

Or see this region's nucleotide sequence