Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0362 and Sama_R0022 are separated by 513 nucleotides Sama_R0022 and Sama_R0023 are separated by 70 nucleotides Sama_R0023 and Sama_R0024 are separated by 119 nucleotides Sama_R0024 and Sama_R0025 are separated by 276 nucleotides
Sama_0362: Sama_0362 - preprotein translocase subunit SecA (RefSeq), at 432,836 to 435,562
_0362
Sama_R0022: Sama_R0022 - 16S ribosomal RNA (RefSeq), at 436,076 to 437,612
_R0022
Sama_R0023: Sama_R0023 - tRNA-Ile (RefSeq), at 437,683 to 437,759
_R0023
Sama_R0024: Sama_R0024 - tRNA-Ala (RefSeq), at 437,879 to 437,954
_R0024
Sama_R0025: Sama_R0025 - 23S ribosomal RNA (RefSeq), at 438,231 to 441,144
_R0025
Position (kb)
436
437
438 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 435.346 kb on - strand at 435.346 kb on - strand at 435.398 kb on + strand at 435.399 kb on - strand at 435.533 kb on + strand at 435.533 kb on + strand at 435.550 kb on + strand at 435.550 kb on + strand at 435.550 kb on + strand at 435.563 kb on + strand at 435.563 kb on + strand at 435.607 kb on + strand at 435.608 kb on - strand at 435.668 kb on + strand at 435.669 kb on - strand at 435.680 kb on + strand at 435.681 kb on - strand at 435.681 kb on - strand at 435.770 kb on + strand at 435.770 kb on + strand at 435.770 kb on + strand at 435.770 kb on + strand at 435.770 kb on + strand at 435.771 kb on - strand at 435.771 kb on - strand at 435.772 kb on + strand at 435.772 kb on + strand at 435.772 kb on + strand at 435.773 kb on - strand at 435.816 kb on + strand at 435.828 kb on + strand at 435.828 kb on + strand at 435.829 kb on - strand at 435.848 kb on - strand at 435.848 kb on - strand at 435.848 kb on - strand at 435.872 kb on + strand at 435.905 kb on - strand at 435.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 435,346 - +0.9 435,346 - +0.6 435,398 + -0.4 435,399 - -0.2 435,533 + +0.6 435,533 + -0.2 435,550 + -1.0 435,550 + +0.1 435,550 + +0.2 435,563 + +1.1 435,563 + -0.8 435,607 + -1.7 435,608 - -0.5 435,668 + +0.3 435,669 - +2.1 435,680 + -0.8 435,681 - -0.3 435,681 - +1.6 435,770 + +0.5 435,770 + -0.4 435,770 + -0.7 435,770 + +2.2 435,770 + -0.2 435,771 - +0.8 435,771 - -2.8 435,772 + -1.2 435,772 + -0.2 435,772 + +0.2 435,773 - +0.1 435,816 + +0.0 435,828 + +0.6 435,828 + -0.5 435,829 - +1.2 435,848 - -0.9 435,848 - +2.0 435,848 - -0.2 435,872 + -1.4 435,905 - +1.2 435,905 - +1.6
Or see this region's nucleotide sequence