Strain Fitness in Shewanella amazonensis SB2B around Sama_0201

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0199 and secE are separated by 244 nucleotidessecE and Sama_0201 are separated by 4 nucleotidesSama_0201 and rplK are separated by 123 nucleotidesrplK and Sama_0203 are separated by 4 nucleotides Sama_0199: Sama_0199 - elongation factor Tu (RefSeq), at 233,618 to 234,802 _0199 Sama_0200: secE - preprotein translocase subunit SecE (RefSeq), at 235,047 to 235,418 secE Sama_0201: Sama_0201 - transcription antitermination protein NusG (RefSeq), at 235,423 to 235,974 _0201 Sama_0202: rplK - 50S ribosomal protein L11 (RefSeq), at 236,098 to 236,526 rplK Sama_0203: Sama_0203 - 50S ribosomal protein L1 (RefSeq), at 236,531 to 237,232 _0203 Position (kb) 235 236Strain fitness (log2 ratio) -1 0 1 2at 234.830 kb on + strandat 234.830 kb on + strandat 234.830 kb on + strandat 234.857 kb on - strandat 234.861 kb on + strandat 234.861 kb on + strandat 234.862 kb on - strandat 235.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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234,830 + +1.6
234,830 + +0.5
234,830 + +0.5
234,857 - +0.3
234,861 + -0.9
234,861 + +0.5
234,862 - -0.0
235,985 + +2.0

Or see this region's nucleotide sequence