Strain Fitness in Shewanella loihica PV-4 around Shew_3840

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3839 and Shew_3840 are separated by 35 nucleotidesShew_3840 and Shew_3841 are separated by 145 nucleotides Shew_3839: Shew_3839 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 4,569,026 to 4,570,855 _3839 Shew_3840: Shew_3840 - DeoR family transcriptional regulator (RefSeq), at 4,570,891 to 4,571,661 _3840 Shew_3841: Shew_3841 - TonB-dependent siderophore receptor (RefSeq), at 4,571,807 to 4,573,945 _3841 Position (kb) 4570 4571 4572Strain fitness (log2 ratio) -1 0 1 2 3 4at 4571.561 kb on - strand, within Shew_3840at 4571.790 kb on - strandat 4572.025 kb on + strand, within Shew_3841at 4572.275 kb on + strand, within Shew_3841

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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4,571,561 - Shew_3840 0.87 +0.4
4,571,790 - +1.2
4,572,025 + Shew_3841 0.10 +1.4
4,572,275 + Shew_3841 0.22 +4.1

Or see this region's nucleotide sequence