Strain Fitness in Shewanella loihica PV-4 around Shew_3556

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3555 and Shew_3556 are separated by 168 nucleotidesShew_3556 and Shew_3557 are separated by 3 nucleotides Shew_3555: Shew_3555 - hypothetical protein (RefSeq), at 4,246,258 to 4,247,082 _3555 Shew_3556: Shew_3556 - aminotransferase, class V (RefSeq), at 4,247,251 to 4,248,363 _3556 Shew_3557: Shew_3557 - hypothetical protein (RefSeq), at 4,248,367 to 4,249,539 _3557 Position (kb) 4247 4248 4249Strain fitness (log2 ratio) -2 -1 0 1at 4246.553 kb on + strand, within Shew_3555at 4246.685 kb on + strand, within Shew_3555at 4246.685 kb on + strand, within Shew_3555at 4246.693 kb on - strand, within Shew_3555at 4246.911 kb on - strand, within Shew_3555at 4247.238 kb on + strandat 4247.246 kb on - strandat 4247.246 kb on - strandat 4247.346 kb on + strandat 4247.363 kb on + strand, within Shew_3556at 4247.867 kb on - strand, within Shew_3556at 4248.039 kb on - strand, within Shew_3556at 4248.093 kb on + strand, within Shew_3556at 4248.167 kb on + strand, within Shew_3556at 4248.765 kb on + strand, within Shew_3557at 4249.137 kb on + strand, within Shew_3557at 4249.229 kb on + strand, within Shew_3557at 4249.349 kb on + strand, within Shew_3557at 4249.357 kb on - strand, within Shew_3557at 4249.357 kb on - strand, within Shew_3557

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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4,246,553 + Shew_3555 0.36 +0.5
4,246,685 + Shew_3555 0.52 -0.5
4,246,685 + Shew_3555 0.52 +0.4
4,246,693 - Shew_3555 0.53 -1.4
4,246,911 - Shew_3555 0.79 +0.1
4,247,238 + +0.5
4,247,246 - -0.3
4,247,246 - +0.1
4,247,346 + -1.1
4,247,363 + Shew_3556 0.10 -1.3
4,247,867 - Shew_3556 0.55 +0.5
4,248,039 - Shew_3556 0.71 -0.5
4,248,093 + Shew_3556 0.76 -1.0
4,248,167 + Shew_3556 0.82 +0.1
4,248,765 + Shew_3557 0.34 -2.4
4,249,137 + Shew_3557 0.66 -0.5
4,249,229 + Shew_3557 0.73 +0.9
4,249,349 + Shew_3557 0.84 -0.3
4,249,357 - Shew_3557 0.84 -0.7
4,249,357 - Shew_3557 0.84 -1.5

Or see this region's nucleotide sequence