Strain Fitness in Shewanella loihica PV-4 around Shew_3145

Experiment: Vancomycin 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.0625 mg/ml
3,738,133	-		Shew_3144	0.78	-1.1
3,738,135	-		Shew_3144	0.78	-1.0
3,738,957	-				+0.6
3,739,046	+				+0.1
3,739,150	-				+0.0
3,739,175	+				+1.6
3,739,183	-		Shew_3145	0.11	+0.3
3,739,310	-		Shew_3145	0.32	-0.6
3,739,343	-		Shew_3145	0.38	-0.1
3,739,345	+		Shew_3145	0.38	-0.6
3,739,372	+		Shew_3145	0.42	-2.5
3,739,400	-		Shew_3145	0.47	+0.1
3,739,451	+		Shew_3145	0.56	-0.1
3,739,451	+		Shew_3145	0.56	+0.3
3,739,459	+		Shew_3145	0.57	+1.1
3,739,495	+		Shew_3145	0.63	+1.1
3,739,495	+		Shew_3145	0.63	+0.3
3,739,503	-		Shew_3145	0.64	-0.1
3,739,578	+		Shew_3145	0.77	+1.2
3,739,580	+		Shew_3145	0.77	+0.5
3,739,586	-		Shew_3145	0.78	+1.0
3,739,587	-		Shew_3145	0.78	+0.1
3,739,589	+		Shew_3145	0.79	+0.2
3,739,597	-		Shew_3145	0.80	+0.1
3,739,599	+		Shew_3145	0.80	+0.6
3,739,599	+		Shew_3145	0.80	+0.2
3,739,599	+		Shew_3145	0.80	+0.3
3,739,599	+		Shew_3145	0.80	+0.2
3,739,607	-		Shew_3145	0.82	+0.6
3,739,607	-		Shew_3145	0.82	+0.3
3,739,612	+		Shew_3145	0.83	+0.5
3,739,612	+		Shew_3145	0.83	+0.3
3,739,620	-		Shew_3145	0.84	-0.0
3,739,620	-		Shew_3145	0.84	+0.6
3,739,620	-		Shew_3145	0.84	+1.4
3,739,630	-		Shew_3145	0.86	-0.2
3,739,733	-				+0.2
3,739,733	-				+0.4
3,739,752	+				+0.3
3,739,754	+				+0.0
3,739,754	+				+0.3
3,739,754	+				-0.0
3,739,755	-				-0.1
3,739,762	+				+0.2
3,739,762	+				+0.0
3,739,762	+				-0.2
3,739,770	-				+0.1
3,739,771	+				+0.7
3,739,888	+				+1.1
3,739,910	-				-0.6
3,739,929	+				-0.2
3,739,929	+				-0.7
3,739,929	+				-1.1
3,739,929	+				+0.7
3,739,929	+				-0.9
3,739,936	-				+0.2
3,739,936	-				-0.1
3,739,937	-				-0.4
3,739,937	-				+0.4
3,739,946	-				+0.1
3,739,967	+				+0.3
3,739,969	+				-0.6
3,739,974	+				-0.0
3,739,974	+				-0.4
3,739,974	+				+0.3
3,739,974	+				+0.6
3,739,974	+				-0.8
3,739,974	+				+0.5
3,739,982	-				-1.5
3,739,982	-				+0.0
3,739,982	-				-0.6
3,739,982	-				+0.3
3,739,982	-				+0.2
3,739,982	-				+0.0
3,739,982	-				+0.7
3,739,982	-				-0.5
3,739,982	-				+0.8
3,739,982	-				-0.5
3,739,982	-				+0.3
3,739,984	-				-0.0
3,740,018	-				+0.6
3,740,042	+				+0.0
3,740,071	-				+0.0
3,740,072	+				-0.3
3,740,072	+				+0.6
3,740,072	+				+0.0
3,740,080	-				+1.2
3,740,080	-				+0.0
3,740,098	+				+0.1
3,740,098	+				+0.9
3,740,106	-				+0.5
3,740,106	-				+0.3
3,740,107	+				-1.4
3,740,107	+				-0.6
3,740,107	+				-1.3
3,740,115	-				-0.6
3,740,124	+				+0.4
3,740,152	+				+0.8
3,740,165	-				+0.4
3,740,165	-				-0.3
3,740,167	+				+0.3
3,740,170	+				+0.5
3,740,170	+				-0.3
3,740,174	-				-0.2
3,740,174	-				-0.2
3,740,174	-				+0.5
3,740,174	-				-0.1
3,740,180	+				+0.6
3,740,180	+				-0.3
3,740,185	+				+0.3
3,740,185	+				+1.8
3,740,188	-				+0.3
3,740,188	-				+0.7
3,740,200	-				+0.3
3,740,206	+				+0.1
3,740,206	+				-0.2
3,740,213	+				-0.6
3,740,214	-				+0.4
3,740,222	-				+0.8
3,740,301	-				+0.3
3,740,307	+				+0.0
3,740,312	+				+0.3
3,740,312	+				-0.9
3,740,312	+				+1.0
3,740,312	+				+0.4
3,740,312	+				-0.2
3,740,312	+				+0.4
3,740,317	+				+0.4
3,740,317	+				-1.6
3,740,325	-				+0.0
3,740,325	-				-0.4
3,740,325	-				-0.3
3,740,325	-				-0.3
3,740,346	-				+0.5
3,740,398	+				-0.6
3,740,398	+				-0.4
3,740,398	+				-0.1
3,740,398	+				-0.8
3,740,398	+				-0.3
3,740,398	+				+0.1
3,740,398	+				+0.8
3,740,398	+				-0.5
3,740,398	+				-0.6
3,740,398	+				+0.2
3,740,398	+				-0.1
3,740,398	+				-1.3
3,740,398	+				-0.2
3,740,398	+				+0.2
3,740,398	+				-0.2
3,740,398	+				+0.2
3,740,398	+				+0.1
3,740,398	+				-0.1
3,740,398	+				-0.2
3,740,398	+				+0.8
3,740,398	+				+0.5
3,740,398	+				+0.2
3,740,398	+				-0.5
3,740,398	+				-0.2
3,740,398	+				+0.6
3,740,398	+				+0.4
3,740,398	+				-0.7
3,740,398	+				+0.9
3,740,398	+				-0.7
3,740,398	+				+0.4
3,740,398	+				+0.6
3,740,398	+				-0.7
3,740,404	+				+0.9
3,740,405	-				-0.5
3,740,406	-				+0.0
3,740,406	-				+0.3
3,740,406	-				-0.4
3,740,406	-				-0.3
3,740,406	-				+0.2
3,740,406	-				-1.2
3,740,406	-				+0.2
3,740,406	-				-0.1
3,740,406	-				+0.0
3,740,406	-				-1.4
3,740,406	-				-0.1
3,740,412	-				-0.8
3,740,412	+				+0.2
3,740,422	+				+0.3
3,740,422	+				-0.4
3,740,422	+				-0.2
3,740,422	+				+0.1
3,740,422	+				+0.2
3,740,430	-				-0.9
3,740,430	-				+1.0
3,740,430	-				-0.1
3,740,430	-				-0.8
3,740,430	-				+0.5
3,740,431	+				+0.1
3,740,440	-				+0.3
3,740,450	+				+0.2
3,740,458	-				+0.5
3,740,458	-				+0.1
3,740,462	+				+0.5
3,740,467	+				+0.6
3,740,467	+				+0.3
3,740,467	+				+0.2
3,740,469	+				-0.8
3,740,470	-				+0.3
3,740,475	-				-0.4
3,740,477	+				+0.0
3,740,477	+				+0.8
3,740,477	+				+1.0
3,740,477	+				+0.9
3,740,477	+				+0.5
3,740,477	+				+0.0
3,740,477	+				+1.0
3,740,482	-				-0.3
3,740,485	-				+0.1
3,740,487	+				+0.4
3,740,487	+				+0.4
3,740,487	+				-0.2
3,740,490	+				-1.5
3,740,495	-				+0.3
3,740,498	+				+0.9
3,740,498	+				+0.2
3,740,498	-				+0.0
3,740,504	-		Shew_3146	0.11	-0.8
3,740,506	-		Shew_3146	0.12	+0.5
3,740,506	-		Shew_3146	0.12	+0.3
3,740,548	+		Shew_3146	0.21	-0.2
3,740,559	+		Shew_3146	0.23	+0.1
3,740,559	+		Shew_3146	0.23	+0.1
3,740,559	+		Shew_3146	0.23	+0.6
3,740,566	-		Shew_3146	0.25	+0.0
3,740,576	-		Shew_3146	0.27	+0.5
3,740,586	+		Shew_3146	0.29	-0.5
3,740,586	+		Shew_3146	0.29	+0.5
3,740,616	-		Shew_3146	0.35	-0.4
3,740,626	-		Shew_3146	0.37	+0.3
3,740,647	+		Shew_3146	0.42	-0.1
3,740,647	+		Shew_3146	0.42	-0.5
3,740,647	+		Shew_3146	0.42	-0.4
3,740,647	+		Shew_3146	0.42	+0.1
3,740,655	-		Shew_3146	0.44	+0.0
3,740,690	+		Shew_3146	0.51	-0.1
3,740,695	+		Shew_3146	0.52	+1.0
3,740,704	+		Shew_3146	0.54	+0.6
3,740,714	+		Shew_3146	0.56	-0.0