Strain Fitness in Shewanella loihica PV-4 around Shew_2756
Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vancomycin 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,259,648 | + | Shew_2755 | 0.37 | +0.5 | |
3,260,209 | + | Shew_2755 | 0.78 | -0.7 | |
3,260,781 | - | xni | Shew_2756 | 0.34 | -0.9 |
3,260,870 | + | xni | Shew_2756 | 0.45 | -0.3 |
3,260,870 | + | xni | Shew_2756 | 0.45 | -0.5 |
3,260,878 | - | xni | Shew_2756 | 0.46 | -0.6 |
3,260,971 | + | xni | Shew_2756 | 0.58 | -0.1 |
3,261,129 | + | xni | Shew_2756 | 0.79 | -1.1 |
3,261,624 | - | Shew_2757 | 0.47 | -0.1 | |
3,261,675 | + | Shew_2757 | 0.60 | -0.2 | |
3,261,675 | + | Shew_2757 | 0.60 | -0.3 | |
3,261,836 | + | +0.3 | |||
3,261,852 | + | -0.0 | |||
3,261,860 | - | -0.6 | |||
3,261,864 | + | +0.1 |
Or see this region's nucleotide sequence