Strain Fitness in Shewanella loihica PV-4 around Shew_2756

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2755 and xni are separated by 18 nucleotidesxni and Shew_2757 are separated by 152 nucleotidesShew_2757 and Shew_2758 are separated by 23 nucleotides Shew_2755: Shew_2755 - hypothetical protein (RefSeq), at 3,259,149 to 3,260,501 _2755 Shew_2756: xni - exonuclease IX (RefSeq), at 3,260,520 to 3,261,290 xni Shew_2757: Shew_2757 - hypothetical protein (RefSeq), at 3,261,443 to 3,261,829 _2757 Shew_2758: Shew_2758 - hypothetical protein (RefSeq), at 3,261,853 to 3,262,335 _2758 Position (kb) 3260 3261 3262Strain fitness (log2 ratio) -1 0 1at 3259.648 kb on + strand, within Shew_2755at 3260.209 kb on + strand, within Shew_2755at 3260.781 kb on - strand, within xniat 3260.870 kb on + strand, within xniat 3260.870 kb on + strand, within xniat 3260.878 kb on - strand, within xniat 3260.971 kb on + strand, within xniat 3261.129 kb on + strand, within xniat 3261.624 kb on - strand, within Shew_2757at 3261.675 kb on + strand, within Shew_2757at 3261.675 kb on + strand, within Shew_2757at 3261.836 kb on + strandat 3261.852 kb on + strandat 3261.860 kb on - strandat 3261.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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3,259,648 + Shew_2755 0.37 +0.5
3,260,209 + Shew_2755 0.78 -0.7
3,260,781 - xni Shew_2756 0.34 -0.9
3,260,870 + xni Shew_2756 0.45 -0.3
3,260,870 + xni Shew_2756 0.45 -0.5
3,260,878 - xni Shew_2756 0.46 -0.6
3,260,971 + xni Shew_2756 0.58 -0.1
3,261,129 + xni Shew_2756 0.79 -1.1
3,261,624 - Shew_2757 0.47 -0.1
3,261,675 + Shew_2757 0.60 -0.2
3,261,675 + Shew_2757 0.60 -0.3
3,261,836 + +0.3
3,261,852 + -0.0
3,261,860 - -0.6
3,261,864 + +0.1

Or see this region's nucleotide sequence