Strain Fitness in Shewanella loihica PV-4 around Shew_2536

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2535 and Shew_2536 are separated by 40 nucleotidesShew_2536 and Shew_2537 are separated by 307 nucleotides Shew_2535: Shew_2535 - pyridoxal-dependent decarboxylase (RefSeq), at 2,992,865 to 2,994,505 _2535 Shew_2536: Shew_2536 - putative thiol-disulphide oxidoreductase DCC (RefSeq), at 2,994,546 to 2,995,016 _2536 Shew_2537: Shew_2537 - AraC family transcriptional regulator (RefSeq), at 2,995,324 to 2,996,262 _2537 Position (kb) 2994 2995 2996Strain fitness (log2 ratio) -2 -1 0 1at 2993.619 kb on + strand, within Shew_2535at 2994.378 kb on + strandat 2994.655 kb on + strand, within Shew_2536at 2994.737 kb on + strand, within Shew_2536at 2994.958 kb on + strand, within Shew_2536at 2995.031 kb on + strandat 2995.127 kb on - strandat 2995.157 kb on + strandat 2995.435 kb on - strand, within Shew_2537at 2995.519 kb on - strand, within Shew_2537at 2995.668 kb on - strand, within Shew_2537

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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2,993,619 + Shew_2535 0.46 -0.1
2,994,378 + +0.9
2,994,655 + Shew_2536 0.23 +0.4
2,994,737 + Shew_2536 0.41 -1.4
2,994,958 + Shew_2536 0.87 +0.2
2,995,031 + +0.2
2,995,127 - +0.2
2,995,157 + -1.1
2,995,435 - Shew_2537 0.12 -0.0
2,995,519 - Shew_2537 0.21 +0.1
2,995,668 - Shew_2537 0.37 -2.6

Or see this region's nucleotide sequence