Strain Fitness in Shewanella loihica PV-4 around Shew_1914

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1912 and Shew_1913 are separated by 28 nucleotidesShew_1913 and Shew_1914 are separated by 302 nucleotidesShew_1914 and Shew_1915 are separated by 278 nucleotidesShew_1915 and Shew_1916 are separated by 47 nucleotides Shew_1912: Shew_1912 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,210,118 to 2,211,443 _1912 Shew_1913: Shew_1913 - hypothetical protein (RefSeq), at 2,211,472 to 2,212,059 _1913 Shew_1914: Shew_1914 - aminotransferase AlaT (RefSeq), at 2,212,362 to 2,213,576 _1914 Shew_1915: Shew_1915 - elongation factor P (RefSeq), at 2,213,855 to 2,214,415 _1915 Shew_1916: Shew_1916 - hypothetical protein (RefSeq), at 2,214,463 to 2,215,632 _1916 Position (kb) 2212 2213 2214Strain fitness (log2 ratio) -1 0 1at 2212.020 kb on - strandat 2212.375 kb on - strandat 2212.487 kb on - strand, within Shew_1914at 2213.371 kb on + strand, within Shew_1914at 2213.383 kb on + strand, within Shew_1914at 2213.623 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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2,212,020 - +0.9
2,212,375 - -0.2
2,212,487 - Shew_1914 0.10 +1.1
2,213,371 + Shew_1914 0.83 +0.6
2,213,383 + Shew_1914 0.84 +0.6
2,213,623 + +0.5

Or see this region's nucleotide sequence