Strain Fitness in Shewanella loihica PV-4 around Shew_1686

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1685 and Shew_1686 are separated by 309 nucleotidesShew_1686 and Shew_1687 are separated by 328 nucleotides Shew_1685: Shew_1685 - collagenase (RefSeq), at 1,935,281 to 1,938,187 _1685 Shew_1686: Shew_1686 - hypothetical protein (RefSeq), at 1,938,497 to 1,939,174 _1686 Shew_1687: Shew_1687 - hypothetical protein (RefSeq), at 1,939,503 to 1,940,006 _1687 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -2 -1 0 1 2at 1937.561 kb on + strand, within Shew_1685at 1937.593 kb on + strand, within Shew_1685at 1937.601 kb on - strand, within Shew_1685at 1937.601 kb on - strand, within Shew_1685at 1937.601 kb on - strand, within Shew_1685at 1937.992 kb on - strandat 1938.140 kb on + strandat 1938.284 kb on - strandat 1938.604 kb on - strand, within Shew_1686at 1938.794 kb on - strand, within Shew_1686at 1939.323 kb on + strandat 1939.820 kb on - strand, within Shew_1687

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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1,937,561 + Shew_1685 0.78 -0.0
1,937,593 + Shew_1685 0.80 +0.6
1,937,601 - Shew_1685 0.80 +1.9
1,937,601 - Shew_1685 0.80 +0.8
1,937,601 - Shew_1685 0.80 +1.0
1,937,992 - +0.2
1,938,140 + +0.4
1,938,284 - -0.1
1,938,604 - Shew_1686 0.16 +0.6
1,938,794 - Shew_1686 0.44 +0.5
1,939,323 + -0.8
1,939,820 - Shew_1687 0.63 -1.9

Or see this region's nucleotide sequence