Strain Fitness in Shewanella loihica PV-4 around Shew_1419

Experiment: Vancomycin 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.0625 mg/ml
1,632,044	+				-0.0
1,632,046	+				+0.3
1,632,046	+				+1.9
1,632,046	+				-0.2
1,632,054	-				+0.4
1,632,054	-				-0.2
1,632,059	+				+0.6
1,632,067	-		Shew_1418	0.10	-0.7
1,632,080	+		Shew_1418	0.12	+0.5
1,632,228	-		Shew_1418	0.28	-0.1
1,632,409	+		Shew_1418	0.47	+0.5
1,632,412	-		Shew_1418	0.48	+0.5
1,632,412	-		Shew_1418	0.48	-0.3
1,632,417	-		Shew_1418	0.48	+0.9
1,632,417	-		Shew_1418	0.48	+1.9
1,632,467	+		Shew_1418	0.54	+0.3
1,632,756	+		Shew_1418	0.85	-0.1
1,632,797	-		Shew_1418	0.90	+0.4
1,632,974	+				+0.2
1,632,982	-				-0.3
1,633,044	+				+0.1
1,633,044	+				+0.1
1,633,044	+				-0.0
1,633,050	-				-0.0
1,633,052	-				+0.4
1,633,052	-				+1.4
1,633,052	-				-0.2
1,633,052	-				-0.5
1,633,052	-				+0.3
1,633,052	-				+0.6
1,633,067	+				+0.6
1,633,070	-				+1.1
1,633,246	+		Shew_1419	0.27	+0.6
1,633,578	+		Shew_1419	0.64	+0.4
1,633,648	+		Shew_1419	0.71	-0.7
1,633,648	+		Shew_1419	0.71	-0.9
1,633,648	+		Shew_1419	0.71	-0.2
1,633,656	-		Shew_1419	0.72	+1.7
1,633,656	-		Shew_1419	0.72	+3.2
1,633,707	-		Shew_1419	0.78	-1.6
1,633,756	-		Shew_1419	0.84	-2.7
1,633,770	+		Shew_1419	0.85	+0.5
1,633,833	+				-0.8
1,634,178	+		Shew_1420	0.13	-0.7
1,634,254	-		Shew_1420	0.23	+0.9
1,634,290	+		Shew_1420	0.28	+0.8
1,634,609	+		Shew_1420	0.71	-0.1
1,634,609	+		Shew_1420	0.71	+0.1
1,634,609	+		Shew_1420	0.71	+0.5
1,634,609	+		Shew_1420	0.71	-0.5
1,634,617	-		Shew_1420	0.72	+0.6
1,634,617	-		Shew_1420	0.72	-0.1
1,634,617	-		Shew_1420	0.72	-0.6
1,634,622	+		Shew_1420	0.72	+0.6
1,634,680	-		Shew_1420	0.80	+0.3
1,634,687	-		Shew_1420	0.81	+0.6
1,634,797	-				-0.5
1,634,798	-				-0.4
1,634,830	-				-0.8
1,634,837	+				-0.3
1,634,882	+				-0.1
1,634,886	+				+0.4
1,634,887	+				+0.1
1,634,887	+				+0.0
1,634,887	+				+0.4
1,634,887	+				-0.5
1,634,887	+				-0.5
1,634,887	+				+0.8
1,634,887	+				+0.1
1,634,887	+				+1.4
1,634,895	-				+0.7
1,634,895	-				-1.3
1,634,895	-				+0.2
1,634,895	-				-1.8
1,634,895	-				-0.8