Strain Fitness in Shewanella loihica PV-4 around Shew_1416

Experiment: Vancomycin 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.0625 mg/ml
1,628,730	+		Shew_1415	0.37	-0.2
1,628,738	+		Shew_1415	0.38	+0.9
1,628,875	+		Shew_1415	0.53	+0.2
1,628,903	-		Shew_1415	0.56	+1.5
1,628,924	+		Shew_1415	0.58	-2.4
1,628,924	+		Shew_1415	0.58	+1.1
1,628,932	-		Shew_1415	0.59	+0.4
1,629,013	+		Shew_1415	0.68	+0.2
1,629,056	-		Shew_1415	0.73	-0.7
1,629,162	+		Shew_1415	0.84	+0.6
1,629,169	-		Shew_1415	0.85	+0.3
1,629,198	+		Shew_1415	0.88	-0.9
1,629,198	+		Shew_1415	0.88	+0.8
1,629,219	-				-1.2
1,629,238	-				+0.2
1,629,262	-				+2.2
1,629,273	+				-0.2
1,629,273	+				+0.2
1,629,273	+				-0.5
1,629,273	+				-0.2
1,629,273	+				-1.2
1,629,273	+				+0.1
1,629,273	+				+0.6
1,629,277	+				-0.4
1,629,277	+				-0.6
1,629,277	+				+0.5
1,629,277	+				+1.8
1,629,277	+				-0.4
1,629,277	+				-2.1
1,629,277	+				-0.4
1,629,277	+				+0.1
1,629,277	+				+0.1
1,629,277	+				-0.0
1,629,281	-				+2.0
1,629,281	-				+1.1
1,629,281	-				+0.8
1,629,281	-				+0.7
1,629,281	-				+1.0
1,629,281	-				+0.4
1,629,285	-				-0.9
1,629,285	-				-0.2
1,629,302	+				+1.0
1,629,309	+				+1.4
1,629,309	+				+1.2
1,629,309	+				+0.0
1,629,309	+				+0.5
1,629,309	+				+0.8
1,629,309	+				+1.0
1,629,309	+				+0.5
1,629,309	+				-0.0
1,629,309	+				+0.5
1,629,311	+				-0.3
1,629,317	-				+2.4
1,629,317	-				+1.6
1,629,317	-				+0.3
1,629,317	-				+0.3
1,629,317	-				+1.3
1,629,319	+				-0.5
1,629,319	+				-0.1
1,629,319	+				-0.6
1,629,319	+				-0.4
1,629,319	+				-0.2
1,629,319	+				-1.6
1,629,319	+				-0.1
1,629,319	+				-0.1
1,629,319	+				+0.4
1,629,319	+				+0.0
1,629,319	+				-0.3
1,629,319	+				-0.2
1,629,319	+				+0.5
1,629,319	+				-0.2
1,629,319	+				-0.4
1,629,319	+				-0.2
1,629,319	+				-0.1
1,629,319	+				-0.2
1,629,319	+				+0.9
1,629,319	+				-0.9
1,629,319	+				-0.6
1,629,319	+				-0.5
1,629,322	+				+0.1
1,629,327	-				+1.6
1,629,327	-				-1.1
1,629,327	-				+0.9
1,629,327	-				+0.8
1,629,327	-				+0.7
1,629,327	-				+0.5
1,629,327	-				+0.6
1,629,327	-				+0.3
1,629,327	-				+0.9
1,629,327	-				+3.7
1,629,327	-				+3.7
1,629,327	-				+2.2
1,629,327	-				+0.9
1,629,327	-				+1.3
1,629,327	-				+1.5
1,629,327	-				+0.8
1,629,327	-				+0.3
1,629,327	-				+2.0
1,629,327	-				+0.1
1,629,327	-				+0.7
1,629,327	-				-0.3
1,629,327	-				+1.3
1,629,327	-				+0.8
1,629,329	+				-0.3
1,629,332	+				+0.5
1,629,341	+				+0.2
1,629,346	+				+0.1
1,629,349	-				+0.9
1,629,349	-				+1.5
1,629,433	-				+2.3
1,629,433	-				+1.5
1,629,446	-				+1.5
1,629,506	+				-0.4
1,629,516	+				-0.1
1,629,516	+				+0.5
1,629,524	-				+2.9
1,629,539	-				+1.0
1,629,634	+				-0.0
1,629,634	+				-0.4
1,629,635	+				+0.3
1,629,642	-				+1.4
1,629,642	-				+0.5
1,629,642	-				+1.6
1,629,642	-				+1.6
1,629,642	-				+1.6
1,629,643	-				+2.2
1,629,647	+				+0.7
1,629,649	-				+2.1
1,629,659	+				-0.1
1,629,667	+				+0.1
1,629,667	+				+0.3
1,629,675	-				+0.8
1,629,675	-				+1.9
1,629,675	-				-0.0
1,629,675	-				+1.4
1,629,675	-				+1.5
1,629,760	-				+2.3
1,629,760	-				+1.3
1,629,770	+				+1.5
1,629,770	+				+0.8
1,629,770	+				+1.0
1,629,770	+				-0.1
1,629,770	+				+1.3
1,629,778	-				+0.9
1,629,778	-				+0.8
1,629,778	-				+1.4
1,629,780	-				+0.9
1,629,804	-		Shew_1416	0.12	+0.8
1,629,804	-		Shew_1416	0.12	-0.1
1,629,841	+		Shew_1416	0.15	+1.3
1,629,846	+		Shew_1416	0.16	+1.3
1,629,851	+		Shew_1416	0.16	+0.8
1,629,868	+		Shew_1416	0.18	-0.8
1,629,885	+		Shew_1416	0.19	+1.3
1,629,902	+		Shew_1416	0.21	+2.2
1,629,902	+		Shew_1416	0.21	+1.5
1,629,907	+		Shew_1416	0.21	+1.9
1,629,907	+		Shew_1416	0.21	+1.1
1,629,910	-		Shew_1416	0.22	+1.6
1,629,912	+		Shew_1416	0.22	+0.6
1,629,915	-		Shew_1416	0.22	+2.2
1,629,915	-		Shew_1416	0.22	+0.1
1,629,920	-		Shew_1416	0.23	+0.1
1,630,007	+		Shew_1416	0.31	+1.6
1,630,024	-		Shew_1416	0.32	+1.3
1,630,051	+		Shew_1416	0.35	+1.5
1,630,157	+		Shew_1416	0.45	+1.6
1,630,172	+		Shew_1416	0.46	+1.0
1,630,202	+		Shew_1416	0.49	+1.2
1,630,210	-		Shew_1416	0.50	+0.1
1,630,210	-		Shew_1416	0.50	+1.8
1,630,210	-		Shew_1416	0.50	+1.4
1,630,239	+		Shew_1416	0.52	+0.9
1,630,265	-		Shew_1416	0.55	+0.7
1,630,298	+		Shew_1416	0.58	+1.8
1,630,308	+		Shew_1416	0.59	+1.1
1,630,314	-		Shew_1416	0.59	+1.1
1,630,419	-		Shew_1416	0.69	+0.3
1,630,521	-		Shew_1416	0.79	+0.3
1,630,604	+		Shew_1416	0.87	-0.2
1,630,721	+				+1.0
1,630,728	+				+0.2
1,630,749	-				+0.7
1,630,749	-				+1.6
1,630,763	+				+0.3
1,630,814	+				+1.6
1,630,815	+				+0.5
1,630,822	+				+1.0
1,630,830	-				+4.1
1,630,846	+				+0.8
1,630,854	+				+0.5
1,630,856	+				+0.9
1,630,860	+				+1.1
1,630,915	-				+1.5
1,630,917	-				+1.4
1,630,929	+				+0.6
1,631,189	+		Shew_1417	0.28	+0.0
1,631,202	+		Shew_1417	0.29	+0.3
1,631,280	+		Shew_1417	0.36	+1.1
1,631,360	+		Shew_1417	0.44	+1.3
1,631,388	-		Shew_1417	0.47	+0.8
1,631,390	-		Shew_1417	0.47	+2.4
1,631,396	+		Shew_1417	0.48	+1.1
1,631,403	-		Shew_1417	0.48	-0.1
1,631,426	-		Shew_1417	0.50	+4.2
1,631,426	-		Shew_1417	0.50	+2.2
1,631,550	-		Shew_1417	0.62	+1.9
1,631,562	+		Shew_1417	0.63	+1.3
1,631,569	+		Shew_1417	0.64	+0.8
1,631,569	+		Shew_1417	0.64	+0.7
1,631,577	-		Shew_1417	0.65	+2.7
1,631,642	-		Shew_1417	0.71	+1.1