Strain Fitness in Shewanella loihica PV-4 around Shew_1093

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1092 and Shew_1093 are separated by 127 nucleotidesShew_1093 and Shew_1094 are separated by 180 nucleotides Shew_1092: Shew_1092 - amino acid carrier protein (RefSeq), at 1,259,341 to 1,260,819 _1092 Shew_1093: Shew_1093 - hypothetical protein (RefSeq), at 1,260,947 to 1,261,723 _1093 Shew_1094: Shew_1094 - peptidase M28 (RefSeq), at 1,261,904 to 1,263,310 _1094 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -3 -2 -1 0 1at 1260.063 kb on + strand, within Shew_1092at 1260.550 kb on - strand, within Shew_1092at 1261.409 kb on - strand, within Shew_1093at 1261.546 kb on + strand, within Shew_1093at 1261.584 kb on + strand, within Shew_1093at 1261.753 kb on - strandat 1261.886 kb on + strandat 1262.342 kb on + strand, within Shew_1094at 1262.348 kb on - strand, within Shew_1094at 1262.705 kb on + strand, within Shew_1094at 1262.713 kb on - strand, within Shew_1094

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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1,260,063 + Shew_1092 0.49 +0.5
1,260,550 - Shew_1092 0.82 +0.5
1,261,409 - Shew_1093 0.59 -2.8
1,261,546 + Shew_1093 0.77 -0.5
1,261,584 + Shew_1093 0.82 -3.0
1,261,753 - -1.2
1,261,886 + +0.5
1,262,342 + Shew_1094 0.31 +0.7
1,262,348 - Shew_1094 0.32 +0.4
1,262,705 + Shew_1094 0.57 -0.5
1,262,713 - Shew_1094 0.57 -0.5

Or see this region's nucleotide sequence