Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0830 and Shew_0831 are separated by 40 nucleotides Shew_0831 and Shew_0832 are separated by 358 nucleotides Shew_0832 and Shew_0833 are separated by 262 nucleotides Shew_0833 and Shew_0834 are separated by 82 nucleotides
Shew_0830: Shew_0830 - LrgB family protein (RefSeq), at 952,139 to 952,828
_0830
Shew_0831: Shew_0831 - CBS domain-containing protein (RefSeq), at 952,869 to 953,288
_0831
Shew_0832: Shew_0832 - alkaline phosphatase (RefSeq), at 953,647 to 955,419
_0832
Shew_0833: Shew_0833 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 955,682 to 956,248
_0833
Shew_0834: Shew_0834 - hypothetical protein (RefSeq), at 956,331 to 956,543
_0834
Position (kb) 953
954
955
956 Strain fitness (log2 ratio) -1
0
1 at 952.763 kb on + strand at 952.903 kb on - strand at 952.903 kb on - strand at 953.524 kb on + strand at 953.605 kb on - strand at 953.942 kb on - strand, within Shew_0832 at 954.027 kb on + strand, within Shew_0832 at 954.309 kb on - strand, within Shew_0832 at 954.666 kb on + strand, within Shew_0832 at 955.287 kb on - strand at 955.292 kb on + strand at 955.312 kb on + strand at 955.378 kb on + strand at 955.797 kb on + strand, within Shew_0833 at 956.214 kb on - strand at 956.293 kb on - strand at 956.329 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml remove 952,763 + -0.4 952,903 - +0.4 952,903 - +0.8 953,524 + +0.3 953,605 - -0.1 953,942 - Shew_0832 0.17 +1.2 954,027 + Shew_0832 0.21 -0.8 954,309 - Shew_0832 0.37 +0.5 954,666 + Shew_0832 0.57 +0.4 955,287 - -0.2 955,292 + +0.3 955,312 + +0.5 955,378 + +0.6 955,797 + Shew_0833 0.20 -1.0 956,214 - -0.2 956,293 - -0.0 956,329 + -0.0
Or see this region's nucleotide sequence