Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0667 and Shew_0668 are separated by 481 nucleotides Shew_0668 and Shew_0669 are separated by 101 nucleotides Shew_0669 and Shew_0670 are separated by 116 nucleotides
Shew_0667: Shew_0667 - phosphoadenosine phosphosulfate reductase (RefSeq), at 758,921 to 759,673
_0667
Shew_0668: Shew_0668 - hypothetical protein (RefSeq), at 760,155 to 761,870
_0668
Shew_0669: Shew_0669 - redoxin domain-containing protein (RefSeq), at 761,972 to 762,502
_0669
Shew_0670: Shew_0670 - hypothetical protein (RefSeq), at 762,619 to 764,085
_0670
Position (kb) 760
761
762 Strain fitness (log2 ratio) -1
0
1 at 759.254 kb on + strand, within Shew_0667 at 759.262 kb on - strand, within Shew_0667 at 759.689 kb on - strand at 759.965 kb on + strand at 759.973 kb on - strand at 760.313 kb on + strand at 760.361 kb on + strand, within Shew_0668 at 760.574 kb on - strand, within Shew_0668 at 760.831 kb on + strand, within Shew_0668 at 760.877 kb on - strand, within Shew_0668 at 761.025 kb on + strand, within Shew_0668 at 761.188 kb on + strand, within Shew_0668 at 761.370 kb on - strand, within Shew_0668 at 761.599 kb on + strand, within Shew_0668 at 761.606 kb on - strand, within Shew_0668 at 761.606 kb on - strand, within Shew_0668 at 761.806 kb on - strand at 761.853 kb on - strand at 761.858 kb on - strand at 762.071 kb on + strand, within Shew_0669 at 762.243 kb on + strand, within Shew_0669 at 762.438 kb on + strand, within Shew_0669 at 762.438 kb on + strand, within Shew_0669 at 762.438 kb on + strand, within Shew_0669 at 762.864 kb on + strand, within Shew_0670
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml remove 759,254 + Shew_0667 0.44 -0.2 759,262 - Shew_0667 0.45 +0.3 759,689 - +0.0 759,965 + -1.7 759,973 - +0.5 760,313 + -0.5 760,361 + Shew_0668 0.12 -0.7 760,574 - Shew_0668 0.24 -1.0 760,831 + Shew_0668 0.39 +0.8 760,877 - Shew_0668 0.42 +0.5 761,025 + Shew_0668 0.51 +0.4 761,188 + Shew_0668 0.60 +0.5 761,370 - Shew_0668 0.71 +1.0 761,599 + Shew_0668 0.84 +0.2 761,606 - Shew_0668 0.85 +0.6 761,606 - Shew_0668 0.85 +1.2 761,806 - +0.2 761,853 - +0.3 761,858 - +0.9 762,071 + Shew_0669 0.19 +0.3 762,243 + Shew_0669 0.51 +0.6 762,438 + Shew_0669 0.88 +0.1 762,438 + Shew_0669 0.88 -0.0 762,438 + Shew_0669 0.88 -0.2 762,864 + Shew_0670 0.17 -1.1
Or see this region's nucleotide sequence