Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0581 and Shew_0582 are separated by 97 nucleotides Shew_0582 and Shew_0583 overlap by 4 nucleotides Shew_0583 and Shew_0584 are separated by 110 nucleotides
Shew_0581: Shew_0581 - hypothetical protein (RefSeq), at 659,179 to 659,979
_0581
Shew_0582: Shew_0582 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 660,077 to 661,414
_0582
Shew_0583: Shew_0583 - two component transcriptional regulator (RefSeq), at 661,411 to 662,085
_0583
Shew_0584: Shew_0584 - hypothetical protein (RefSeq), at 662,196 to 662,534
_0584
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 659.327 kb on + strand, within Shew_0581 at 659.335 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.448 kb on + strand, within Shew_0581 at 659.456 kb on - strand, within Shew_0581 at 659.497 kb on - strand, within Shew_0581 at 659.826 kb on + strand, within Shew_0581 at 659.894 kb on + strand, within Shew_0581 at 660.208 kb on - strand at 660.265 kb on + strand, within Shew_0582 at 660.379 kb on + strand, within Shew_0582 at 660.474 kb on - strand, within Shew_0582 at 660.761 kb on + strand, within Shew_0582 at 660.820 kb on + strand, within Shew_0582 at 661.022 kb on + strand, within Shew_0582 at 661.093 kb on - strand, within Shew_0582 at 661.216 kb on + strand, within Shew_0582 at 661.438 kb on + strand at 661.474 kb on - strand at 661.685 kb on - strand, within Shew_0583 at 661.685 kb on - strand, within Shew_0583 at 662.378 kb on + strand, within Shew_0584
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml remove 659,327 + Shew_0581 0.18 +0.0 659,335 - Shew_0581 0.19 -1.0 659,417 - Shew_0581 0.30 -0.1 659,417 - Shew_0581 0.30 +0.4 659,448 + Shew_0581 0.34 +1.3 659,456 - Shew_0581 0.35 +0.2 659,497 - Shew_0581 0.40 +0.6 659,826 + Shew_0581 0.81 +2.9 659,894 + Shew_0581 0.89 -0.3 660,208 - +0.0 660,265 + Shew_0582 0.14 +0.3 660,379 + Shew_0582 0.23 -1.5 660,474 - Shew_0582 0.30 +0.0 660,761 + Shew_0582 0.51 -0.6 660,820 + Shew_0582 0.56 -0.3 661,022 + Shew_0582 0.71 -0.0 661,093 - Shew_0582 0.76 -0.6 661,216 + Shew_0582 0.85 +0.1 661,438 + +0.4 661,474 - -2.8 661,685 - Shew_0583 0.41 -1.1 661,685 - Shew_0583 0.41 -1.3 662,378 + Shew_0584 0.54 +0.7
Or see this region's nucleotide sequence