Strain Fitness in Shewanella loihica PV-4 around Shew_0197

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_R0010 and Shew_R0011 are separated by 101 nucleotidesShew_R0011 and Shew_R0012 are separated by 33 nucleotidesShew_R0012 and Shew_0197 are separated by 101 nucleotidesShew_0197 and Shew_0198 are separated by 217 nucleotides Shew_R0010: Shew_R0010 - 23S ribosomal RNA (RefSeq), at 205,195 to 208,087 _R0010 Shew_R0011: Shew_R0011 - 5S ribosomal RNA (RefSeq), at 208,189 to 208,309 _R0011 Shew_R0012: Shew_R0012 - tRNA-Asp (RefSeq), at 208,343 to 208,419 _R0012 Shew_0197: Shew_0197 - hypothetical protein (RefSeq), at 208,521 to 209,021 _0197 Shew_0198: Shew_0198 - competence/damage-inducible protein CinA (RefSeq), at 209,239 to 210,513 _0198 Position (kb) 208 209 210Strain fitness (log2 ratio) -1 0 1at 208.791 kb on + strand, within Shew_0197at 209.188 kb on + strandat 209.205 kb on - strandat 209.551 kb on - strand, within Shew_0198at 209.646 kb on - strand, within Shew_0198at 209.735 kb on - strand, within Shew_0198at 209.857 kb on + strand, within Shew_0198at 209.962 kb on + strand, within Shew_0198

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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208,791 + Shew_0197 0.54 -1.1
209,188 + +0.9
209,205 - -0.5
209,551 - Shew_0198 0.24 -0.1
209,646 - Shew_0198 0.32 -0.5
209,735 - Shew_0198 0.39 +0.6
209,857 + Shew_0198 0.48 -0.6
209,962 + Shew_0198 0.57 +0.2

Or see this region's nucleotide sequence