Strain Fitness in Shewanella oneidensis MR-1 around SO4141

Experiment: Paraquat dichloride 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.25 mg/ml
4,296,616	+				+0.0
4,296,644	+				+0.4
4,296,669	+				+0.9
4,296,669	+				-0.0
4,296,677	-				-0.0
4,296,677	-				-0.1
4,296,677	-				+1.4
4,296,682	-				-0.4
4,296,687	-		SO4140	0.10	+0.7
4,296,687	-		SO4140	0.10	+0.5
4,296,687	-		SO4140	0.10	+0.6
4,296,687	-		SO4140	0.10	+0.4
4,296,711	+		SO4140	0.13	+0.1
4,296,769	+		SO4140	0.20	+0.4
4,296,859	+		SO4140	0.31	-0.1
4,296,867	-		SO4140	0.32	+1.3
4,296,868	-		SO4140	0.32	-0.4
4,296,930	-		SO4140	0.40	+0.3
4,296,944	-		SO4140	0.42	-0.5
4,296,944	-		SO4140	0.42	-0.3
4,296,976	+		SO4140	0.45	+0.1
4,296,984	-		SO4140	0.46	+1.0
4,296,986	-		SO4140	0.47	+0.0
4,296,986	-		SO4140	0.47	+0.0
4,297,039	-		SO4140	0.53	+0.2
4,297,156	+		SO4140	0.67	-0.6
4,297,158	+		SO4140	0.68	-0.1
4,297,188	+		SO4140	0.71	+0.3
4,297,196	-		SO4140	0.72	+0.3
4,297,196	-		SO4140	0.72	+0.1
4,297,262	+		SO4140	0.80	-0.1
4,297,262	+		SO4140	0.80	+1.1
4,297,262	+		SO4140	0.80	+0.2
4,297,262	+		SO4140	0.80	+0.1
4,297,270	-		SO4140	0.81	-0.6
4,297,270	-		SO4140	0.81	+0.1
4,297,270	-		SO4140	0.81	+0.1
4,297,270	-		SO4140	0.81	+1.8
4,297,498	-				+0.1
4,297,831	-		SO4141	0.31	+0.8
4,297,932	+		SO4141	0.45	+0.2
4,297,937	+		SO4141	0.46	+0.7
4,297,956	+		SO4141	0.48	+1.0
4,297,964	-		SO4141	0.49	+0.5
4,297,964	-		SO4141	0.49	+1.0
4,297,964	-		SO4141	0.49	+0.5
4,297,964	-		SO4141	0.49	+0.1
4,298,082	-		SO4141	0.66	+0.7
4,298,113	+		SO4141	0.70	+0.3
4,298,121	-		SO4141	0.71	+0.1
4,298,327	+				-0.4
4,298,327	+				+0.5
4,298,328	+				-1.4
4,298,335	-				+0.5
4,298,335	-				-1.1
4,298,355	-				-0.0
4,298,356	-				+0.3
4,298,368	+				-0.6
4,298,384	+				+0.8
4,298,506	-				+0.4
4,298,542	+				+0.5
4,298,915	+		SO4142	0.17	-0.0
4,298,920	+		SO4142	0.18	+1.4
4,298,920	+		SO4142	0.18	-0.0
4,298,923	-		SO4142	0.19	+0.2
4,298,923	-		SO4142	0.19	-0.2
4,298,928	-		SO4142	0.20	+0.0
4,299,009	+		SO4142	0.45	+0.0
4,299,009	+		SO4142	0.45	+0.2
4,299,169	+				-0.1
4,299,198	+				+0.6
4,299,217	+				+0.3
4,299,291	+				+0.1
4,299,299	-				+1.1
4,299,326	+				-0.3
4,299,326	+				+0.6