Strain Fitness in Shewanella oneidensis MR-1 around SO4091

Experiment: Paraquat dichloride 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.25 mg/ml
4,244,785	-		SO4090	0.40	-0.9
4,244,965	+		SO4090	0.53	-2.0
4,245,091	-		SO4090	0.62	-1.0
4,245,091	-		SO4090	0.62	-1.7
4,245,107	+		SO4090	0.63	-1.3
4,245,107	+		SO4090	0.63	-1.5
4,245,115	-		SO4090	0.64	-1.2
4,245,214	+		SO4090	0.70	-1.4
4,245,233	+		SO4090	0.72	-1.4
4,245,251	-		SO4090	0.73	-3.1
4,245,275	+		SO4090	0.75	-1.5
4,245,355	-		SO4090	0.80	-1.2
4,245,441	+		SO4090	0.86	-1.2
4,245,478	-		SO4090	0.89	-1.0
4,245,478	-		SO4090	0.89	-1.1
4,245,499	+				-1.4
4,245,527	-				-1.9
4,245,527	-				-1.6
4,245,527	-				-2.7
4,245,561	+				-2.2
4,245,569	-				+0.9
4,245,639	+				-1.3
4,245,647	-				+0.3
4,245,647	-				+0.0
4,245,648	-				+0.9
4,245,695	-				-0.4
4,245,772	-				-0.2
4,245,864	+				+2.8
4,245,864	+				-0.7
4,246,020	+	tldD	SO4091	0.17	-0.6
4,246,025	+	tldD	SO4091	0.18	-1.4
4,246,090	+	tldD	SO4091	0.22	-0.7
4,246,098	-	tldD	SO4091	0.23	-2.1
4,246,177	+	tldD	SO4091	0.28	+0.1
4,246,185	-	tldD	SO4091	0.29	+0.0
4,246,229	-	tldD	SO4091	0.32	-0.6
4,246,229	-	tldD	SO4091	0.32	-0.7
4,246,280	+	tldD	SO4091	0.35	-0.5
4,246,319	+	tldD	SO4091	0.38	-0.2
4,246,423	+	tldD	SO4091	0.45	-0.6
4,246,454	+	tldD	SO4091	0.47	-1.0
4,246,454	+	tldD	SO4091	0.47	+0.0
4,246,505	+	tldD	SO4091	0.51	-1.2
4,246,517	+	tldD	SO4091	0.52	-0.6
4,246,518	-	tldD	SO4091	0.52	-0.7
4,246,537	+	tldD	SO4091	0.53	-1.4
4,246,735	+	tldD	SO4091	0.67	-0.1
4,246,843	+	tldD	SO4091	0.74	-0.9
4,246,843	+	tldD	SO4091	0.74	-1.2
4,246,843	+	tldD	SO4091	0.74	-1.1
4,246,843	+	tldD	SO4091	0.74	-0.3
4,246,851	-	tldD	SO4091	0.75	+0.2
4,246,851	-	tldD	SO4091	0.75	-0.2
4,246,851	-	tldD	SO4091	0.75	-0.3
4,246,856	+	tldD	SO4091	0.75	-0.5
4,246,864	-	tldD	SO4091	0.76	+0.1
4,246,922	+	tldD	SO4091	0.80	+0.3
4,246,924	-	tldD	SO4091	0.80	-0.6
4,246,946	+	tldD	SO4091	0.81	-0.5
4,246,954	-	tldD	SO4091	0.82	+0.1
4,247,014	+	tldD	SO4091	0.86	-0.0
4,247,014	+	tldD	SO4091	0.86	-0.1
4,247,022	-	tldD	SO4091	0.87	-0.4
4,247,022	-	tldD	SO4091	0.87	-0.2
4,247,022	-	tldD	SO4091	0.87	-0.4
4,247,034	-	tldD	SO4091	0.87	-1.1
4,247,071	+				-0.4
4,247,136	-				-0.2
4,247,167	-				-0.7
4,247,330	+				+0.9
4,247,479	+		SO4092	0.15	-0.0
4,247,548	+		SO4092	0.23	-0.8
4,247,556	-		SO4092	0.24	-0.8
4,247,556	-		SO4092	0.24	+0.4
4,247,566	-		SO4092	0.25	-0.1
4,247,601	-		SO4092	0.29	-0.4
4,247,612	-		SO4092	0.30	+0.1
4,247,636	+		SO4092	0.33	+0.3
4,247,646	+		SO4092	0.34	-1.4
4,247,694	+		SO4092	0.40	-0.4
4,247,788	-		SO4092	0.51	-0.0
4,247,858	+		SO4092	0.59	+0.2
4,247,858	+		SO4092	0.59	-0.2
4,247,866	-		SO4092	0.60	+0.5
4,247,906	-		SO4092	0.65	-0.3
4,247,916	-		SO4092	0.66	-0.2
4,247,916	-		SO4092	0.66	-0.1
4,247,937	-		SO4092	0.69	-0.1
4,247,994	-		SO4092	0.75	+0.6
4,248,172	-				-1.0