Strain Fitness in Shewanella oneidensis MR-1 around SO3110

Experiment: Paraquat dichloride 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.25 mg/ml
3,237,616	+				-0.1
3,237,624	-				-0.9
3,237,676	-				+0.8
3,237,694	-				+0.7
3,237,798	+				-0.0
3,237,908	-				+0.1
3,238,002	-		SO3109	0.12	-0.2
3,238,062	-		SO3109	0.26	-0.4
3,238,111	+		SO3109	0.37	-0.3
3,238,121	+		SO3109	0.40	-1.3
3,238,129	-		SO3109	0.41	-0.5
3,238,129	-		SO3109	0.41	-0.2
3,238,137	+		SO3109	0.43	+0.4
3,238,207	-		SO3109	0.59	-0.1
3,238,215	+		SO3109	0.61	-0.3
3,238,403	+				+0.0
3,238,654	+	secF-2	SO3110	0.13	-2.1
3,239,045	+	secF-2	SO3110	0.54	-1.4
3,239,180	+	secF-2	SO3110	0.69	-0.3
3,239,275	-	secF-2	SO3110	0.79	-0.2
3,239,295	-	secF-2	SO3110	0.81	-1.2
3,239,400	-				-0.7
3,239,407	+				-0.6
3,239,407	+				-0.2
3,239,495	-				-0.3
3,239,706	-	secD-2	SO3111	0.12	-0.3
3,239,807	-	secD-2	SO3111	0.17	-2.1
3,239,829	+	secD-2	SO3111	0.18	-0.9
3,239,829	+	secD-2	SO3111	0.18	-1.0
3,239,829	+	secD-2	SO3111	0.18	-0.9
3,239,837	-	secD-2	SO3111	0.19	-0.5
3,239,837	-	secD-2	SO3111	0.19	-1.2
3,239,837	-	secD-2	SO3111	0.19	-0.8
3,239,837	-	secD-2	SO3111	0.19	-1.3
3,239,967	-	secD-2	SO3111	0.26	-1.2
3,239,967	-	secD-2	SO3111	0.26	+0.7
3,240,013	-	secD-2	SO3111	0.28	-0.3
3,240,081	+	secD-2	SO3111	0.32	-0.2
3,240,128	-	secD-2	SO3111	0.34	-0.6
3,240,315	-	secD-2	SO3111	0.45	-0.9
3,240,380	+	secD-2	SO3111	0.48	-0.1