Experiment: Paraquat dichloride 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1458 and SO1459 are separated by 2 nucleotides SO1459 and SO1460 are separated by 65 nucleotides SO1460 and SO1461 are separated by 9 nucleotides
SO1458: SO1458 - hypothetical protein (NCBI ptt file), at 1,516,293 to 1,517,588
SO1458
SO1459: SO1459 - hypothetical protein (NCBI ptt file), at 1,517,591 to 1,518,253
SO1459
SO1460: SO1460 - type I restriction-modification system, S subunit, putative (NCBI ptt file), at 1,518,319 to 1,519,659
SO1460
SO1461: SO1461 - protein kinase, putative (NCBI ptt file), at 1,519,669 to 1,523,799
SO1461
Position (kb)
1518
1519
1520 Strain fitness (log2 ratio)
-2
-1
0
1 at 1517.323 kb on + strand, within SO1458 at 1517.323 kb on + strand, within SO1458 at 1517.323 kb on + strand, within SO1458 at 1517.331 kb on - strand, within SO1458 at 1517.331 kb on - strand, within SO1458 at 1517.331 kb on - strand, within SO1458 at 1517.331 kb on - strand, within SO1458 at 1517.331 kb on - strand, within SO1458 at 1517.359 kb on - strand, within SO1458 at 1517.388 kb on - strand, within SO1458 at 1517.425 kb on + strand, within SO1458 at 1517.461 kb on + strand at 1517.579 kb on - strand at 1517.759 kb on + strand, within SO1459 at 1517.767 kb on - strand, within SO1459 at 1517.767 kb on - strand, within SO1459 at 1517.789 kb on + strand, within SO1459 at 1517.797 kb on - strand, within SO1459 at 1517.797 kb on - strand, within SO1459 at 1517.797 kb on - strand, within SO1459 at 1517.797 kb on - strand, within SO1459 at 1517.802 kb on - strand, within SO1459 at 1517.855 kb on + strand, within SO1459 at 1517.929 kb on + strand, within SO1459 at 1517.997 kb on + strand, within SO1459 at 1518.021 kb on + strand, within SO1459 at 1518.021 kb on + strand, within SO1459 at 1518.021 kb on + strand, within SO1459 at 1518.029 kb on - strand, within SO1459 at 1518.029 kb on - strand, within SO1459 at 1518.029 kb on - strand, within SO1459 at 1518.029 kb on - strand, within SO1459 at 1518.067 kb on + strand, within SO1459 at 1518.075 kb on - strand, within SO1459 at 1518.075 kb on - strand, within SO1459 at 1518.075 kb on - strand, within SO1459 at 1518.183 kb on + strand, within SO1459 at 1518.194 kb on - strand at 1518.228 kb on - strand at 1518.272 kb on + strand at 1518.272 kb on + strand at 1518.280 kb on - strand at 1518.280 kb on - strand at 1518.357 kb on + strand at 1518.367 kb on - strand at 1518.403 kb on + strand at 1518.410 kb on - strand at 1518.433 kb on + strand at 1518.441 kb on - strand at 1518.464 kb on + strand, within SO1460 at 1518.464 kb on - strand, within SO1460 at 1518.502 kb on + strand, within SO1460 at 1518.591 kb on + strand, within SO1460 at 1518.599 kb on - strand, within SO1460 at 1518.599 kb on - strand, within SO1460 at 1518.613 kb on + strand, within SO1460 at 1518.627 kb on + strand, within SO1460 at 1518.650 kb on - strand, within SO1460 at 1518.734 kb on - strand, within SO1460 at 1518.739 kb on + strand, within SO1460 at 1518.739 kb on + strand, within SO1460 at 1518.744 kb on + strand, within SO1460 at 1518.842 kb on + strand, within SO1460 at 1518.863 kb on - strand, within SO1460 at 1519.073 kb on - strand, within SO1460 at 1519.073 kb on - strand, within SO1460 at 1519.209 kb on - strand, within SO1460 at 1519.250 kb on + strand, within SO1460 at 1519.283 kb on - strand, within SO1460 at 1519.469 kb on + strand, within SO1460 at 1519.469 kb on + strand, within SO1460 at 1519.570 kb on + strand at 1519.602 kb on + strand at 1519.653 kb on + strand at 1519.661 kb on - strand at 1519.703 kb on + strand at 1519.711 kb on - strand at 1519.728 kb on - strand at 1519.817 kb on + strand at 1519.817 kb on + strand at 1519.961 kb on - strand at 1520.015 kb on - strand at 1520.019 kb on + strand at 1520.036 kb on + strand at 1520.036 kb on + strand at 1520.036 kb on + strand at 1520.044 kb on - strand at 1520.044 kb on - strand at 1520.178 kb on - strand, within SO1461 at 1520.321 kb on + strand, within SO1461 at 1520.339 kb on - strand, within SO1461 at 1520.345 kb on - strand, within SO1461 at 1520.543 kb on - strand, within SO1461
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.25 mg/ml remove 1,517,323 + SO1458 0.79 -0.9 1,517,323 + SO1458 0.79 -0.4 1,517,323 + SO1458 0.79 -1.9 1,517,331 - SO1458 0.80 -0.0 1,517,331 - SO1458 0.80 -0.2 1,517,331 - SO1458 0.80 -0.9 1,517,331 - SO1458 0.80 +0.2 1,517,331 - SO1458 0.80 -2.0 1,517,359 - SO1458 0.82 +1.1 1,517,388 - SO1458 0.84 -0.7 1,517,425 + SO1458 0.87 +0.2 1,517,461 + -0.0 1,517,579 - +0.1 1,517,759 + SO1459 0.25 -0.4 1,517,767 - SO1459 0.27 -1.4 1,517,767 - SO1459 0.27 +0.0 1,517,789 + SO1459 0.30 -0.4 1,517,797 - SO1459 0.31 -0.3 1,517,797 - SO1459 0.31 +0.0 1,517,797 - SO1459 0.31 -0.2 1,517,797 - SO1459 0.31 +0.0 1,517,802 - SO1459 0.32 -0.2 1,517,855 + SO1459 0.40 +0.3 1,517,929 + SO1459 0.51 -0.2 1,517,997 + SO1459 0.61 -1.2 1,518,021 + SO1459 0.65 +0.8 1,518,021 + SO1459 0.65 -0.1 1,518,021 + SO1459 0.65 -0.9 1,518,029 - SO1459 0.66 -0.7 1,518,029 - SO1459 0.66 -1.4 1,518,029 - SO1459 0.66 -0.2 1,518,029 - SO1459 0.66 +0.6 1,518,067 + SO1459 0.72 -1.4 1,518,075 - SO1459 0.73 -0.3 1,518,075 - SO1459 0.73 -0.5 1,518,075 - SO1459 0.73 +0.2 1,518,183 + SO1459 0.89 -0.3 1,518,194 - +0.0 1,518,228 - -0.1 1,518,272 + -0.4 1,518,272 + -0.4 1,518,280 - -0.9 1,518,280 - -0.8 1,518,357 + -0.8 1,518,367 - +0.2 1,518,403 + +0.4 1,518,410 - +0.4 1,518,433 + -1.4 1,518,441 - +0.1 1,518,464 + SO1460 0.11 -0.6 1,518,464 - SO1460 0.11 -0.7 1,518,502 + SO1460 0.14 -0.9 1,518,591 + SO1460 0.20 +0.1 1,518,599 - SO1460 0.21 +0.2 1,518,599 - SO1460 0.21 +0.6 1,518,613 + SO1460 0.22 +0.5 1,518,627 + SO1460 0.23 -0.9 1,518,650 - SO1460 0.25 -0.6 1,518,734 - SO1460 0.31 +0.5 1,518,739 + SO1460 0.31 -0.7 1,518,739 + SO1460 0.31 +0.1 1,518,744 + SO1460 0.32 -0.3 1,518,842 + SO1460 0.39 -0.6 1,518,863 - SO1460 0.41 +0.6 1,519,073 - SO1460 0.56 -0.5 1,519,073 - SO1460 0.56 -0.2 1,519,209 - SO1460 0.66 +0.7 1,519,250 + SO1460 0.69 -0.0 1,519,283 - SO1460 0.72 -0.9 1,519,469 + SO1460 0.86 -0.6 1,519,469 + SO1460 0.86 -0.3 1,519,570 + -0.4 1,519,602 + -0.2 1,519,653 + -0.3 1,519,661 - -0.6 1,519,703 + +0.6 1,519,711 - +0.6 1,519,728 - +0.6 1,519,817 + -0.1 1,519,817 + +0.1 1,519,961 - +0.2 1,520,015 - +0.4 1,520,019 + +0.5 1,520,036 + -0.2 1,520,036 + +0.1 1,520,036 + -0.3 1,520,044 - -0.4 1,520,044 - +0.9 1,520,178 - SO1461 0.12 -0.0 1,520,321 + SO1461 0.16 -1.3 1,520,339 - SO1461 0.16 -0.9 1,520,345 - SO1461 0.16 +1.7 1,520,543 - SO1461 0.21 -0.5
Or see this region's nucleotide sequence