Strain Fitness in Shewanella oneidensis MR-1 around SO1456

Experiment: Paraquat dichloride 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.25 mg/ml
1,511,544	+				-0.4
1,511,547	-				+1.7
1,511,573	+				-0.4
1,511,581	-				+0.3
1,511,587	+				+0.3
1,511,629	+		SO1454	0.12	-0.1
1,511,671	-		SO1454	0.24	+1.7
1,511,736	-		SO1454	0.42	-0.3
1,511,792	+		SO1454	0.57	-0.3
1,511,907	-		SO1454	0.89	+0.1
1,511,909	+		SO1454	0.90	+0.3
1,511,916	-				-0.7
1,511,955	+				+0.1
1,511,993	-				+0.4
1,512,004	+				+0.9
1,512,095	+		SO1455	0.23	-1.1
1,512,125	+		SO1455	0.29	+0.0
1,512,140	-		SO1455	0.32	-0.4
1,512,205	+		SO1455	0.46	-1.2
1,512,207	-		SO1455	0.46	+0.6
1,512,224	+		SO1455	0.50	-0.8
1,512,252	+		SO1455	0.56	+0.8
1,512,257	+		SO1455	0.57	-0.3
1,512,360	-		SO1455	0.79	+0.2
1,512,445	-				-0.4
1,512,474	-				+0.3
1,513,540	+				-0.0
1,513,543	-				+0.2
1,513,547	+				-0.3
1,513,583	+				-0.1
1,513,591	-				-0.1
1,513,632	+				-0.4
1,513,728	+				+0.6
1,513,728	+				-0.1
1,513,728	+				-0.2
1,513,728	+				-0.1
1,513,736	-				-1.9
1,513,747	-				-1.1
1,513,862	-				-2.0
1,513,992	+				+0.3
1,514,009	-				-2.7
1,514,011	+				-0.9
1,514,011	+				+0.1
1,514,011	-				-0.7
1,514,019	-				-2.8
1,514,019	-				-1.4
1,514,019	-				-0.7
1,514,019	-				-2.1
1,514,047	-				-0.8
1,514,098	+				-0.0
1,514,108	+				-0.1
1,514,115	-				-0.7
1,514,116	-				+0.1
1,514,116	-				-1.2
1,514,127	+				+0.2
1,514,143	-				-0.4
1,514,154	+				-0.5
1,514,220	-				-0.0
1,514,220	-				-1.9
1,514,290	-				-0.1
1,514,302	-				-0.1
1,514,316	+				+0.2
1,514,344	+				-0.2
1,514,344	-				-0.7
1,514,396	+				-0.6
1,514,396	+				-0.3
1,514,404	+				+0.1
1,514,409	-				-1.1
1,514,409	-				+0.1
1,514,429	-				-0.7
1,514,431	+				-1.4
1,514,482	+		SO1457	0.12	-1.3
1,514,485	-		SO1457	0.12	-1.3
1,514,490	-		SO1457	0.12	-0.5