Experiment: Paraquat dichloride 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0576 and SO0577 are separated by 411 nucleotides SO0577 and SO0578 are separated by 129 nucleotides
SO0576: SO0576 - PhoH family protein (NCBI ptt file), at 597,575 to 598,969
SO0576
SO0577: SO0577 - sensory box histidine kinase/response regulator (NCBI ptt file), at 599,381 to 602,947
SO0577
SO0578: SO0578 - hypothetical protein (NCBI ptt file), at 603,077 to 605,479
SO0578
Position (kb) 599
600
601
602
603 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 598.596 kb on + strand, within SO0576 at 598.612 kb on - strand, within SO0576 at 598.736 kb on + strand, within SO0576 at 598.744 kb on + strand, within SO0576 at 598.788 kb on - strand, within SO0576 at 598.859 kb on + strand at 598.862 kb on - strand at 598.867 kb on - strand at 598.902 kb on + strand at 598.910 kb on - strand at 598.966 kb on + strand at 598.969 kb on - strand at 598.980 kb on + strand at 598.996 kb on + strand at 599.182 kb on - strand at 599.409 kb on - strand at 599.625 kb on - strand at 599.625 kb on - strand at 599.625 kb on - strand at 599.693 kb on - strand at 599.722 kb on + strand at 599.893 kb on - strand, within SO0577 at 599.922 kb on + strand, within SO0577 at 599.922 kb on + strand, within SO0577 at 599.930 kb on - strand, within SO0577 at 600.129 kb on + strand, within SO0577 at 600.136 kb on + strand, within SO0577 at 600.142 kb on - strand, within SO0577 at 600.153 kb on + strand, within SO0577 at 600.592 kb on - strand, within SO0577 at 600.749 kb on + strand, within SO0577 at 600.965 kb on - strand, within SO0577 at 601.020 kb on + strand, within SO0577 at 601.255 kb on + strand, within SO0577 at 601.305 kb on - strand, within SO0577 at 601.305 kb on - strand, within SO0577 at 601.344 kb on + strand, within SO0577 at 601.368 kb on - strand, within SO0577 at 601.391 kb on + strand, within SO0577 at 601.480 kb on + strand, within SO0577 at 601.627 kb on + strand, within SO0577 at 601.821 kb on + strand, within SO0577 at 601.829 kb on - strand, within SO0577 at 601.829 kb on - strand, within SO0577 at 601.893 kb on + strand, within SO0577 at 601.970 kb on + strand, within SO0577 at 601.978 kb on - strand, within SO0577 at 601.978 kb on - strand, within SO0577 at 601.978 kb on - strand, within SO0577 at 602.508 kb on + strand, within SO0577 at 602.515 kb on + strand, within SO0577 at 602.523 kb on - strand, within SO0577 at 602.570 kb on + strand, within SO0577 at 602.626 kb on + strand at 602.626 kb on + strand at 602.767 kb on + strand at 602.897 kb on - strand at 602.899 kb on + strand at 602.908 kb on - strand at 603.090 kb on + strand at 603.090 kb on + strand at 603.098 kb on - strand at 603.098 kb on - strand at 603.109 kb on + strand at 603.109 kb on + strand at 603.126 kb on + strand at 603.126 kb on + strand at 603.134 kb on - strand at 603.134 kb on - strand at 603.164 kb on - strand at 603.172 kb on - strand at 603.180 kb on - strand at 603.239 kb on - strand at 603.239 kb on - strand at 603.366 kb on + strand, within SO0578 at 603.385 kb on + strand, within SO0578 at 603.393 kb on - strand, within SO0578 at 603.495 kb on - strand, within SO0578 at 603.543 kb on + strand, within SO0578 at 603.574 kb on - strand, within SO0578 at 603.768 kb on + strand, within SO0578 at 603.768 kb on + strand, within SO0578 at 603.857 kb on - strand, within SO0578 at 603.919 kb on + strand, within SO0578 at 603.926 kb on - strand, within SO0578 at 603.945 kb on + strand, within SO0578
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.25 mg/ml remove 598,596 + SO0576 0.73 -0.4 598,612 - SO0576 0.74 -0.0 598,736 + SO0576 0.83 +0.2 598,744 + SO0576 0.84 -0.8 598,788 - SO0576 0.87 -0.8 598,859 + +0.1 598,862 - -0.2 598,867 - -1.1 598,902 + +0.6 598,910 - -1.3 598,966 + -0.3 598,969 - +0.3 598,980 + +0.1 598,996 + -0.3 599,182 - -4.1 599,409 - -2.4 599,625 - -2.1 599,625 - -4.3 599,625 - -3.5 599,693 - -4.6 599,722 + -3.3 599,893 - SO0577 0.14 -4.5 599,922 + SO0577 0.15 -3.8 599,922 + SO0577 0.15 -2.6 599,930 - SO0577 0.15 -3.0 600,129 + SO0577 0.21 -3.2 600,136 + SO0577 0.21 -3.0 600,142 - SO0577 0.21 -5.2 600,153 + SO0577 0.22 -4.0 600,592 - SO0577 0.34 -3.5 600,749 + SO0577 0.38 -2.9 600,965 - SO0577 0.44 -3.1 601,020 + SO0577 0.46 -3.5 601,255 + SO0577 0.53 -4.5 601,305 - SO0577 0.54 -5.0 601,305 - SO0577 0.54 -3.1 601,344 + SO0577 0.55 -3.1 601,368 - SO0577 0.56 -3.5 601,391 + SO0577 0.56 -4.0 601,480 + SO0577 0.59 -3.8 601,627 + SO0577 0.63 -3.2 601,821 + SO0577 0.68 -2.8 601,829 - SO0577 0.69 -2.8 601,829 - SO0577 0.69 -4.1 601,893 + SO0577 0.70 -2.5 601,970 + SO0577 0.73 -4.9 601,978 - SO0577 0.73 -5.1 601,978 - SO0577 0.73 -3.9 601,978 - SO0577 0.73 -2.6 602,508 + SO0577 0.88 -2.2 602,515 + SO0577 0.88 -1.4 602,523 - SO0577 0.88 -3.3 602,570 + SO0577 0.89 -4.1 602,626 + -2.8 602,626 + -2.6 602,767 + -3.6 602,897 - -4.2 602,899 + -0.1 602,908 - +0.2 603,090 + -0.5 603,090 + +0.1 603,098 - +0.3 603,098 - +0.1 603,109 + -0.2 603,109 + -0.4 603,126 + -0.1 603,126 + +0.2 603,134 - +0.3 603,134 - +0.4 603,164 - +0.3 603,172 - -0.2 603,180 - -1.3 603,239 - -1.7 603,239 - -0.0 603,366 + SO0578 0.12 +0.0 603,385 + SO0578 0.13 -0.6 603,393 - SO0578 0.13 +0.1 603,495 - SO0578 0.17 -0.9 603,543 + SO0578 0.19 +0.6 603,574 - SO0578 0.21 -0.6 603,768 + SO0578 0.29 -0.4 603,768 + SO0578 0.29 -0.0 603,857 - SO0578 0.32 +0.3 603,919 + SO0578 0.35 -0.6 603,926 - SO0578 0.35 -0.4 603,945 + SO0578 0.36 -0.1
Or see this region's nucleotide sequence