Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4123 and Shewana3_4124 are separated by 167 nucleotides Shewana3_4124 and Shewana3_4125 are separated by 79 nucleotides Shewana3_4125 and Shewana3_4126 are separated by 75 nucleotides
Shewana3_4123: Shewana3_4123 - naphthoate synthase (RefSeq), at 4,955,202 to 4,956,104
_4123
Shewana3_4124: Shewana3_4124 - hypothetical protein (RefSeq), at 4,956,272 to 4,956,475
_4124
Shewana3_4125: Shewana3_4125 - glucosamine--fructose-6-phosphate aminotransferase (RefSeq), at 4,956,555 to 4,958,384
_4125
Shewana3_4126: Shewana3_4126 - DeoR family transcriptional regulator (RefSeq), at 4,958,460 to 4,959,230
_4126
Position (kb)
4956
4957
4958
4959 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4955.624 kb on + strand, within Shewana3_4123 at 4955.739 kb on + strand, within Shewana3_4123 at 4955.739 kb on + strand, within Shewana3_4123 at 4955.747 kb on - strand, within Shewana3_4123 at 4955.747 kb on - strand, within Shewana3_4123 at 4955.749 kb on + strand, within Shewana3_4123 at 4955.806 kb on + strand, within Shewana3_4123 at 4955.814 kb on - strand, within Shewana3_4123 at 4955.814 kb on - strand, within Shewana3_4123 at 4955.886 kb on + strand, within Shewana3_4123 at 4955.950 kb on + strand, within Shewana3_4123 at 4956.015 kb on + strand at 4956.015 kb on + strand at 4956.023 kb on - strand at 4956.032 kb on + strand at 4956.036 kb on + strand at 4956.135 kb on - strand at 4956.362 kb on + strand, within Shewana3_4124 at 4956.470 kb on + strand at 4956.499 kb on - strand at 4956.506 kb on - strand at 4958.518 kb on - strand at 4958.576 kb on - strand, within Shewana3_4126 at 4958.753 kb on - strand, within Shewana3_4126 at 4958.821 kb on - strand, within Shewana3_4126 at 4958.872 kb on - strand, within Shewana3_4126 at 4958.879 kb on - strand, within Shewana3_4126 at 4959.125 kb on - strand, within Shewana3_4126 at 4959.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,955,624 + Shewana3_4123 0.47 -0.6 4,955,739 + Shewana3_4123 0.59 +0.5 4,955,739 + Shewana3_4123 0.59 -1.1 4,955,747 - Shewana3_4123 0.60 +0.3 4,955,747 - Shewana3_4123 0.60 +0.8 4,955,749 + Shewana3_4123 0.61 -0.9 4,955,806 + Shewana3_4123 0.67 -0.6 4,955,814 - Shewana3_4123 0.68 +1.7 4,955,814 - Shewana3_4123 0.68 +2.1 4,955,886 + Shewana3_4123 0.76 +0.2 4,955,950 + Shewana3_4123 0.83 +0.6 4,956,015 + -0.5 4,956,015 + +0.7 4,956,023 - +0.4 4,956,032 + -0.9 4,956,036 + +0.7 4,956,135 - -0.8 4,956,362 + Shewana3_4124 0.44 -2.6 4,956,470 + -0.2 4,956,499 - -0.5 4,956,506 - +0.4 4,958,518 - -3.5 4,958,576 - Shewana3_4126 0.15 +1.0 4,958,753 - Shewana3_4126 0.38 +0.2 4,958,821 - Shewana3_4126 0.47 +0.7 4,958,872 - Shewana3_4126 0.53 -0.9 4,958,879 - Shewana3_4126 0.54 +0.3 4,959,125 - Shewana3_4126 0.86 +0.3 4,959,160 - -0.1
Or see this region's nucleotide sequence