Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4125

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4123 and Shewana3_4124 are separated by 167 nucleotidesShewana3_4124 and Shewana3_4125 are separated by 79 nucleotidesShewana3_4125 and Shewana3_4126 are separated by 75 nucleotides Shewana3_4123: Shewana3_4123 - naphthoate synthase (RefSeq), at 4,955,202 to 4,956,104 _4123 Shewana3_4124: Shewana3_4124 - hypothetical protein (RefSeq), at 4,956,272 to 4,956,475 _4124 Shewana3_4125: Shewana3_4125 - glucosamine--fructose-6-phosphate aminotransferase (RefSeq), at 4,956,555 to 4,958,384 _4125 Shewana3_4126: Shewana3_4126 - DeoR family transcriptional regulator (RefSeq), at 4,958,460 to 4,959,230 _4126 Position (kb) 4956 4957 4958 4959Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4955.624 kb on + strand, within Shewana3_4123at 4955.739 kb on + strand, within Shewana3_4123at 4955.739 kb on + strand, within Shewana3_4123at 4955.747 kb on - strand, within Shewana3_4123at 4955.747 kb on - strand, within Shewana3_4123at 4955.749 kb on + strand, within Shewana3_4123at 4955.806 kb on + strand, within Shewana3_4123at 4955.814 kb on - strand, within Shewana3_4123at 4955.814 kb on - strand, within Shewana3_4123at 4955.886 kb on + strand, within Shewana3_4123at 4955.950 kb on + strand, within Shewana3_4123at 4956.015 kb on + strandat 4956.015 kb on + strandat 4956.023 kb on - strandat 4956.032 kb on + strandat 4956.036 kb on + strandat 4956.135 kb on - strandat 4956.362 kb on + strand, within Shewana3_4124at 4956.470 kb on + strandat 4956.499 kb on - strandat 4956.506 kb on - strandat 4958.518 kb on - strandat 4958.576 kb on - strand, within Shewana3_4126at 4958.753 kb on - strand, within Shewana3_4126at 4958.821 kb on - strand, within Shewana3_4126at 4958.872 kb on - strand, within Shewana3_4126at 4958.879 kb on - strand, within Shewana3_4126at 4959.125 kb on - strand, within Shewana3_4126at 4959.160 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,955,624 + Shewana3_4123 0.47 -0.6
4,955,739 + Shewana3_4123 0.59 +0.5
4,955,739 + Shewana3_4123 0.59 -1.1
4,955,747 - Shewana3_4123 0.60 +0.3
4,955,747 - Shewana3_4123 0.60 +0.8
4,955,749 + Shewana3_4123 0.61 -0.9
4,955,806 + Shewana3_4123 0.67 -0.6
4,955,814 - Shewana3_4123 0.68 +1.7
4,955,814 - Shewana3_4123 0.68 +2.1
4,955,886 + Shewana3_4123 0.76 +0.2
4,955,950 + Shewana3_4123 0.83 +0.6
4,956,015 + -0.5
4,956,015 + +0.7
4,956,023 - +0.4
4,956,032 + -0.9
4,956,036 + +0.7
4,956,135 - -0.8
4,956,362 + Shewana3_4124 0.44 -2.6
4,956,470 + -0.2
4,956,499 - -0.5
4,956,506 - +0.4
4,958,518 - -3.5
4,958,576 - Shewana3_4126 0.15 +1.0
4,958,753 - Shewana3_4126 0.38 +0.2
4,958,821 - Shewana3_4126 0.47 +0.7
4,958,872 - Shewana3_4126 0.53 -0.9
4,958,879 - Shewana3_4126 0.54 +0.3
4,959,125 - Shewana3_4126 0.86 +0.3
4,959,160 - -0.1

Or see this region's nucleotide sequence