Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0143

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0142 and Shewana3_R0143 are separated by 297 nucleotidesShewana3_R0143 and Shewana3_4121 are separated by 518 nucleotides Shewana3_R0142: Shewana3_R0142 - 23S ribosomal RNA (RefSeq), at 4,947,950 to 4,950,845 _R0142 Shewana3_R0143: Shewana3_R0143 - 16S ribosomal RNA (RefSeq), at 4,951,143 to 4,952,697 _R0143 Shewana3_4121: Shewana3_4121 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,953,216 to 4,954,643 _4121 Position (kb) 4951 4952 4953Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4953.178 kb on - strandat 4953.331 kb on - strandat 4953.337 kb on - strandat 4953.337 kb on - strandat 4953.348 kb on + strandat 4953.348 kb on + strandat 4953.374 kb on + strand, within Shewana3_4121at 4953.385 kb on + strand, within Shewana3_4121at 4953.443 kb on + strand, within Shewana3_4121at 4953.446 kb on - strand, within Shewana3_4121at 4953.513 kb on - strand, within Shewana3_4121at 4953.605 kb on - strand, within Shewana3_4121

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,953,178 - -0.7
4,953,331 - -0.2
4,953,337 - -2.9
4,953,337 - -1.0
4,953,348 + -0.7
4,953,348 + -0.5
4,953,374 + Shewana3_4121 0.11 -1.4
4,953,385 + Shewana3_4121 0.12 -5.9
4,953,443 + Shewana3_4121 0.16 -0.6
4,953,446 - Shewana3_4121 0.16 -0.9
4,953,513 - Shewana3_4121 0.21 -0.8
4,953,605 - Shewana3_4121 0.27 -1.2

Or see this region's nucleotide sequence