Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4037

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4036 and Shewana3_4037 are separated by 88 nucleotidesShewana3_4037 and Shewana3_4038 are separated by 150 nucleotides Shewana3_4036: Shewana3_4036 - amidohydrolase 3 (RefSeq), at 4,849,150 to 4,850,955 _4036 Shewana3_4037: Shewana3_4037 - hypothetical protein (RefSeq), at 4,851,044 to 4,851,829 _4037 Shewana3_4038: Shewana3_4038 - hypothetical protein (RefSeq), at 4,851,980 to 4,852,825 _4038 Position (kb) 4851 4852Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 4850.099 kb on - strand, within Shewana3_4036at 4850.123 kb on - strand, within Shewana3_4036at 4850.123 kb on - strand, within Shewana3_4036at 4850.123 kb on - strand, within Shewana3_4036at 4850.175 kb on + strand, within Shewana3_4036at 4850.235 kb on + strand, within Shewana3_4036at 4850.292 kb on + strand, within Shewana3_4036at 4850.292 kb on + strand, within Shewana3_4036at 4850.300 kb on - strand, within Shewana3_4036at 4850.300 kb on - strand, within Shewana3_4036at 4850.537 kb on - strand, within Shewana3_4036at 4850.542 kb on + strand, within Shewana3_4036at 4850.887 kb on - strandat 4850.924 kb on - strandat 4850.958 kb on - strandat 4851.167 kb on + strand, within Shewana3_4037at 4851.167 kb on + strand, within Shewana3_4037at 4851.167 kb on + strand, within Shewana3_4037at 4851.167 kb on + strand, within Shewana3_4037at 4851.175 kb on - strand, within Shewana3_4037at 4851.280 kb on + strand, within Shewana3_4037at 4851.436 kb on + strand, within Shewana3_4037at 4851.449 kb on - strand, within Shewana3_4037at 4851.478 kb on - strand, within Shewana3_4037at 4851.534 kb on - strand, within Shewana3_4037at 4851.670 kb on + strand, within Shewana3_4037at 4851.670 kb on + strand, within Shewana3_4037at 4851.678 kb on - strand, within Shewana3_4037at 4851.789 kb on + strandat 4851.791 kb on - strandat 4851.857 kb on - strandat 4851.880 kb on - strandat 4851.882 kb on + strandat 4851.889 kb on + strandat 4851.920 kb on - strandat 4851.959 kb on - strandat 4852.090 kb on - strand, within Shewana3_4038at 4852.154 kb on + strand, within Shewana3_4038at 4852.304 kb on - strand, within Shewana3_4038at 4852.384 kb on + strand, within Shewana3_4038at 4852.424 kb on + strand, within Shewana3_4038at 4852.453 kb on - strand, within Shewana3_4038at 4852.461 kb on + strand, within Shewana3_4038at 4852.535 kb on + strand, within Shewana3_4038at 4852.708 kb on - strand, within Shewana3_4038

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,850,099 - Shewana3_4036 0.53 -0.2
4,850,123 - Shewana3_4036 0.54 +1.4
4,850,123 - Shewana3_4036 0.54 -0.6
4,850,123 - Shewana3_4036 0.54 +0.3
4,850,175 + Shewana3_4036 0.57 +0.6
4,850,235 + Shewana3_4036 0.60 +0.6
4,850,292 + Shewana3_4036 0.63 -0.0
4,850,292 + Shewana3_4036 0.63 -0.1
4,850,300 - Shewana3_4036 0.64 +0.7
4,850,300 - Shewana3_4036 0.64 +0.3
4,850,537 - Shewana3_4036 0.77 -1.9
4,850,542 + Shewana3_4036 0.77 +0.7
4,850,887 - +0.5
4,850,924 - -0.9
4,850,958 - +0.4
4,851,167 + Shewana3_4037 0.16 -0.4
4,851,167 + Shewana3_4037 0.16 -1.1
4,851,167 + Shewana3_4037 0.16 -3.9
4,851,167 + Shewana3_4037 0.16 -1.8
4,851,175 - Shewana3_4037 0.17 -0.4
4,851,280 + Shewana3_4037 0.30 -0.8
4,851,436 + Shewana3_4037 0.50 -2.9
4,851,449 - Shewana3_4037 0.52 -1.7
4,851,478 - Shewana3_4037 0.55 -2.4
4,851,534 - Shewana3_4037 0.62 -1.1
4,851,670 + Shewana3_4037 0.80 +0.8
4,851,670 + Shewana3_4037 0.80 -7.3
4,851,678 - Shewana3_4037 0.81 -1.7
4,851,789 + -2.1
4,851,791 - -4.1
4,851,857 - -0.2
4,851,880 - -1.1
4,851,882 + +3.0
4,851,889 + +0.7
4,851,920 - +0.2
4,851,959 - +0.2
4,852,090 - Shewana3_4038 0.13 +0.7
4,852,154 + Shewana3_4038 0.21 +0.8
4,852,304 - Shewana3_4038 0.38 +0.1
4,852,384 + Shewana3_4038 0.48 +0.5
4,852,424 + Shewana3_4038 0.52 -0.5
4,852,453 - Shewana3_4038 0.56 -0.8
4,852,461 + Shewana3_4038 0.57 +0.4
4,852,535 + Shewana3_4038 0.66 -0.4
4,852,708 - Shewana3_4038 0.86 +0.5

Or see this region's nucleotide sequence