Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4036 and Shewana3_4037 are separated by 88 nucleotides Shewana3_4037 and Shewana3_4038 are separated by 150 nucleotides
Shewana3_4036: Shewana3_4036 - amidohydrolase 3 (RefSeq), at 4,849,150 to 4,850,955
_4036
Shewana3_4037: Shewana3_4037 - hypothetical protein (RefSeq), at 4,851,044 to 4,851,829
_4037
Shewana3_4038: Shewana3_4038 - hypothetical protein (RefSeq), at 4,851,980 to 4,852,825
_4038
Position (kb)
4851
4852 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 4850.099 kb on - strand, within Shewana3_4036 at 4850.123 kb on - strand, within Shewana3_4036 at 4850.123 kb on - strand, within Shewana3_4036 at 4850.123 kb on - strand, within Shewana3_4036 at 4850.175 kb on + strand, within Shewana3_4036 at 4850.235 kb on + strand, within Shewana3_4036 at 4850.292 kb on + strand, within Shewana3_4036 at 4850.292 kb on + strand, within Shewana3_4036 at 4850.300 kb on - strand, within Shewana3_4036 at 4850.300 kb on - strand, within Shewana3_4036 at 4850.537 kb on - strand, within Shewana3_4036 at 4850.542 kb on + strand, within Shewana3_4036 at 4850.887 kb on - strand at 4850.924 kb on - strand at 4850.958 kb on - strand at 4851.167 kb on + strand, within Shewana3_4037 at 4851.167 kb on + strand, within Shewana3_4037 at 4851.167 kb on + strand, within Shewana3_4037 at 4851.167 kb on + strand, within Shewana3_4037 at 4851.175 kb on - strand, within Shewana3_4037 at 4851.280 kb on + strand, within Shewana3_4037 at 4851.436 kb on + strand, within Shewana3_4037 at 4851.449 kb on - strand, within Shewana3_4037 at 4851.478 kb on - strand, within Shewana3_4037 at 4851.534 kb on - strand, within Shewana3_4037 at 4851.670 kb on + strand, within Shewana3_4037 at 4851.670 kb on + strand, within Shewana3_4037 at 4851.678 kb on - strand, within Shewana3_4037 at 4851.789 kb on + strand at 4851.791 kb on - strand at 4851.857 kb on - strand at 4851.880 kb on - strand at 4851.882 kb on + strand at 4851.889 kb on + strand at 4851.920 kb on - strand at 4851.959 kb on - strand at 4852.090 kb on - strand, within Shewana3_4038 at 4852.154 kb on + strand, within Shewana3_4038 at 4852.304 kb on - strand, within Shewana3_4038 at 4852.384 kb on + strand, within Shewana3_4038 at 4852.424 kb on + strand, within Shewana3_4038 at 4852.453 kb on - strand, within Shewana3_4038 at 4852.461 kb on + strand, within Shewana3_4038 at 4852.535 kb on + strand, within Shewana3_4038 at 4852.708 kb on - strand, within Shewana3_4038
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,850,099 - Shewana3_4036 0.53 -0.2 4,850,123 - Shewana3_4036 0.54 +1.4 4,850,123 - Shewana3_4036 0.54 -0.6 4,850,123 - Shewana3_4036 0.54 +0.3 4,850,175 + Shewana3_4036 0.57 +0.6 4,850,235 + Shewana3_4036 0.60 +0.6 4,850,292 + Shewana3_4036 0.63 -0.0 4,850,292 + Shewana3_4036 0.63 -0.1 4,850,300 - Shewana3_4036 0.64 +0.7 4,850,300 - Shewana3_4036 0.64 +0.3 4,850,537 - Shewana3_4036 0.77 -1.9 4,850,542 + Shewana3_4036 0.77 +0.7 4,850,887 - +0.5 4,850,924 - -0.9 4,850,958 - +0.4 4,851,167 + Shewana3_4037 0.16 -0.4 4,851,167 + Shewana3_4037 0.16 -1.1 4,851,167 + Shewana3_4037 0.16 -3.9 4,851,167 + Shewana3_4037 0.16 -1.8 4,851,175 - Shewana3_4037 0.17 -0.4 4,851,280 + Shewana3_4037 0.30 -0.8 4,851,436 + Shewana3_4037 0.50 -2.9 4,851,449 - Shewana3_4037 0.52 -1.7 4,851,478 - Shewana3_4037 0.55 -2.4 4,851,534 - Shewana3_4037 0.62 -1.1 4,851,670 + Shewana3_4037 0.80 +0.8 4,851,670 + Shewana3_4037 0.80 -7.3 4,851,678 - Shewana3_4037 0.81 -1.7 4,851,789 + -2.1 4,851,791 - -4.1 4,851,857 - -0.2 4,851,880 - -1.1 4,851,882 + +3.0 4,851,889 + +0.7 4,851,920 - +0.2 4,851,959 - +0.2 4,852,090 - Shewana3_4038 0.13 +0.7 4,852,154 + Shewana3_4038 0.21 +0.8 4,852,304 - Shewana3_4038 0.38 +0.1 4,852,384 + Shewana3_4038 0.48 +0.5 4,852,424 + Shewana3_4038 0.52 -0.5 4,852,453 - Shewana3_4038 0.56 -0.8 4,852,461 + Shewana3_4038 0.57 +0.4 4,852,535 + Shewana3_4038 0.66 -0.4 4,852,708 - Shewana3_4038 0.86 +0.5
Or see this region's nucleotide sequence