Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3880 and Shewana3_3881 overlap by 4 nucleotides Shewana3_3881 and Shewana3_3882 are separated by 106 nucleotides Shewana3_3882 and Shewana3_3883 overlap by 4 nucleotides Shewana3_3883 and Shewana3_3884 are separated by 18 nucleotides
Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179
_3880
Shewana3_3881: Shewana3_3881 - hypothetical protein (RefSeq), at 4,662,176 to 4,662,502
_3881
Shewana3_3882: Shewana3_3882 - phosphoheptose isomerase (RefSeq), at 4,662,609 to 4,663,202
_3882
Shewana3_3883: Shewana3_3883 - transport-associated (RefSeq), at 4,663,199 to 4,663,765
_3883
Shewana3_3884: Shewana3_3884 - hypothetical protein (RefSeq), at 4,663,784 to 4,664,704
_3884
Position (kb)
4662
4663
4664 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4661.821 kb on + strand, within Shewana3_3880 at 4661.848 kb on + strand, within Shewana3_3880 at 4662.230 kb on + strand, within Shewana3_3881 at 4662.238 kb on - strand, within Shewana3_3881 at 4662.382 kb on - strand, within Shewana3_3881 at 4662.629 kb on - strand at 4662.666 kb on + strand at 4662.677 kb on + strand, within Shewana3_3882 at 4662.782 kb on + strand, within Shewana3_3882 at 4662.845 kb on + strand, within Shewana3_3882 at 4663.002 kb on + strand, within Shewana3_3882 at 4663.037 kb on - strand, within Shewana3_3882 at 4663.099 kb on + strand, within Shewana3_3882 at 4663.201 kb on + strand at 4663.226 kb on - strand at 4663.424 kb on + strand, within Shewana3_3883 at 4663.436 kb on + strand, within Shewana3_3883 at 4663.583 kb on + strand, within Shewana3_3883 at 4663.612 kb on + strand, within Shewana3_3883 at 4663.695 kb on - strand, within Shewana3_3883 at 4663.722 kb on - strand at 4663.727 kb on - strand at 4664.109 kb on - strand, within Shewana3_3884 at 4664.149 kb on - strand, within Shewana3_3884 at 4664.184 kb on - strand, within Shewana3_3884 at 4664.185 kb on - strand, within Shewana3_3884
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,661,821 + Shewana3_3880 0.81 -0.0 4,661,848 + Shewana3_3880 0.82 +0.9 4,662,230 + Shewana3_3881 0.17 -0.9 4,662,238 - Shewana3_3881 0.19 -1.1 4,662,382 - Shewana3_3881 0.63 -0.2 4,662,629 - -3.0 4,662,666 + -2.7 4,662,677 + Shewana3_3882 0.11 -3.6 4,662,782 + Shewana3_3882 0.29 -1.4 4,662,845 + Shewana3_3882 0.40 -0.2 4,663,002 + Shewana3_3882 0.66 -2.7 4,663,037 - Shewana3_3882 0.72 -1.9 4,663,099 + Shewana3_3882 0.82 -2.4 4,663,201 + +1.1 4,663,226 - -0.9 4,663,424 + Shewana3_3883 0.40 +0.3 4,663,436 + Shewana3_3883 0.42 +0.0 4,663,583 + Shewana3_3883 0.68 +1.1 4,663,612 + Shewana3_3883 0.73 +0.1 4,663,695 - Shewana3_3883 0.87 +0.3 4,663,722 - +0.5 4,663,727 - -0.0 4,664,109 - Shewana3_3884 0.35 +0.7 4,664,149 - Shewana3_3884 0.40 -0.7 4,664,184 - Shewana3_3884 0.43 -1.3 4,664,185 - Shewana3_3884 0.44 +0.3
Or see this region's nucleotide sequence