Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3882

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3880 and Shewana3_3881 overlap by 4 nucleotidesShewana3_3881 and Shewana3_3882 are separated by 106 nucleotidesShewana3_3882 and Shewana3_3883 overlap by 4 nucleotidesShewana3_3883 and Shewana3_3884 are separated by 18 nucleotides Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179 _3880 Shewana3_3881: Shewana3_3881 - hypothetical protein (RefSeq), at 4,662,176 to 4,662,502 _3881 Shewana3_3882: Shewana3_3882 - phosphoheptose isomerase (RefSeq), at 4,662,609 to 4,663,202 _3882 Shewana3_3883: Shewana3_3883 - transport-associated (RefSeq), at 4,663,199 to 4,663,765 _3883 Shewana3_3884: Shewana3_3884 - hypothetical protein (RefSeq), at 4,663,784 to 4,664,704 _3884 Position (kb) 4662 4663 4664Strain fitness (log2 ratio) -3 -2 -1 0 1at 4661.821 kb on + strand, within Shewana3_3880at 4661.848 kb on + strand, within Shewana3_3880at 4662.230 kb on + strand, within Shewana3_3881at 4662.238 kb on - strand, within Shewana3_3881at 4662.382 kb on - strand, within Shewana3_3881at 4662.629 kb on - strandat 4662.666 kb on + strandat 4662.677 kb on + strand, within Shewana3_3882at 4662.782 kb on + strand, within Shewana3_3882at 4662.845 kb on + strand, within Shewana3_3882at 4663.002 kb on + strand, within Shewana3_3882at 4663.037 kb on - strand, within Shewana3_3882at 4663.099 kb on + strand, within Shewana3_3882at 4663.201 kb on + strandat 4663.226 kb on - strandat 4663.424 kb on + strand, within Shewana3_3883at 4663.436 kb on + strand, within Shewana3_3883at 4663.583 kb on + strand, within Shewana3_3883at 4663.612 kb on + strand, within Shewana3_3883at 4663.695 kb on - strand, within Shewana3_3883at 4663.722 kb on - strandat 4663.727 kb on - strandat 4664.109 kb on - strand, within Shewana3_3884at 4664.149 kb on - strand, within Shewana3_3884at 4664.184 kb on - strand, within Shewana3_3884at 4664.185 kb on - strand, within Shewana3_3884

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,661,821 + Shewana3_3880 0.81 -0.0
4,661,848 + Shewana3_3880 0.82 +0.9
4,662,230 + Shewana3_3881 0.17 -0.9
4,662,238 - Shewana3_3881 0.19 -1.1
4,662,382 - Shewana3_3881 0.63 -0.2
4,662,629 - -3.0
4,662,666 + -2.7
4,662,677 + Shewana3_3882 0.11 -3.6
4,662,782 + Shewana3_3882 0.29 -1.4
4,662,845 + Shewana3_3882 0.40 -0.2
4,663,002 + Shewana3_3882 0.66 -2.7
4,663,037 - Shewana3_3882 0.72 -1.9
4,663,099 + Shewana3_3882 0.82 -2.4
4,663,201 + +1.1
4,663,226 - -0.9
4,663,424 + Shewana3_3883 0.40 +0.3
4,663,436 + Shewana3_3883 0.42 +0.0
4,663,583 + Shewana3_3883 0.68 +1.1
4,663,612 + Shewana3_3883 0.73 +0.1
4,663,695 - Shewana3_3883 0.87 +0.3
4,663,722 - +0.5
4,663,727 - -0.0
4,664,109 - Shewana3_3884 0.35 +0.7
4,664,149 - Shewana3_3884 0.40 -0.7
4,664,184 - Shewana3_3884 0.43 -1.3
4,664,185 - Shewana3_3884 0.44 +0.3

Or see this region's nucleotide sequence