Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3834

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3831 and Shewana3_3832 are separated by 28 nucleotidesShewana3_3832 and Shewana3_3833 are separated by 17 nucleotidesShewana3_3833 and Shewana3_3834 are separated by 158 nucleotidesShewana3_3834 and Shewana3_3835 are separated by 56 nucleotides Shewana3_3831: Shewana3_3831 - uncharacterized secreted protein (RefSeq), at 4,604,684 to 4,605,541 _3831 Shewana3_3832: Shewana3_3832 - transcriptional antiterminator, Rof (RefSeq), at 4,605,570 to 4,605,836 _3832 Shewana3_3833: Shewana3_3833 - hypothetical protein (RefSeq), at 4,605,854 to 4,606,189 _3833 Shewana3_3834: Shewana3_3834 - endoribonuclease L-PSP (RefSeq), at 4,606,348 to 4,606,704 _3834 Shewana3_3835: Shewana3_3835 - Na+/H+ antiporter NhaC (RefSeq), at 4,606,761 to 4,608,266 _3835 Position (kb) 4606 4607Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 4605.365 kb on + strand, within Shewana3_3831at 4605.408 kb on + strand, within Shewana3_3831at 4605.410 kb on + strand, within Shewana3_3831at 4605.435 kb on - strand, within Shewana3_3831at 4605.600 kb on - strand, within Shewana3_3832at 4605.618 kb on - strand, within Shewana3_3832at 4605.634 kb on + strand, within Shewana3_3832at 4605.654 kb on - strand, within Shewana3_3832at 4605.654 kb on - strand, within Shewana3_3832at 4605.693 kb on + strand, within Shewana3_3832at 4605.698 kb on + strand, within Shewana3_3832at 4605.701 kb on - strand, within Shewana3_3832at 4605.869 kb on - strandat 4605.957 kb on + strand, within Shewana3_3833at 4606.294 kb on - strandat 4606.530 kb on + strand, within Shewana3_3834at 4606.639 kb on - strand, within Shewana3_3834at 4606.691 kb on - strandat 4606.693 kb on + strandat 4606.757 kb on - strandat 4606.832 kb on - strandat 4606.950 kb on + strand, within Shewana3_3835at 4607.156 kb on - strand, within Shewana3_3835at 4607.251 kb on - strand, within Shewana3_3835at 4607.402 kb on - strand, within Shewana3_3835at 4607.494 kb on - strand, within Shewana3_3835

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,605,365 + Shewana3_3831 0.79 -0.7
4,605,408 + Shewana3_3831 0.84 -0.7
4,605,410 + Shewana3_3831 0.85 -1.2
4,605,435 - Shewana3_3831 0.88 -1.3
4,605,600 - Shewana3_3832 0.11 +0.9
4,605,618 - Shewana3_3832 0.18 +0.2
4,605,634 + Shewana3_3832 0.24 -0.3
4,605,654 - Shewana3_3832 0.31 +0.9
4,605,654 - Shewana3_3832 0.31 +0.5
4,605,693 + Shewana3_3832 0.46 +0.8
4,605,698 + Shewana3_3832 0.48 +0.7
4,605,701 - Shewana3_3832 0.49 -0.8
4,605,869 - +0.3
4,605,957 + Shewana3_3833 0.31 -2.2
4,606,294 - +0.6
4,606,530 + Shewana3_3834 0.51 +0.4
4,606,639 - Shewana3_3834 0.82 +0.2
4,606,691 - +0.8
4,606,693 + -6.8
4,606,757 - +0.6
4,606,832 - -0.0
4,606,950 + Shewana3_3835 0.13 -1.3
4,607,156 - Shewana3_3835 0.26 -0.5
4,607,251 - Shewana3_3835 0.33 +0.9
4,607,402 - Shewana3_3835 0.43 +0.6
4,607,494 - Shewana3_3835 0.49 +0.6

Or see this region's nucleotide sequence