Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3769

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3767 and rpmG are separated by 305 nucleotidesrpmG and rpmB are separated by 6 nucleotidesrpmB and radC are separated by 122 nucleotidesradC and Shewana3_3771 are separated by 121 nucleotides Shewana3_3767: Shewana3_3767 - N-acetylglutamate synthase (RefSeq), at 4,528,145 to 4,529,482 _3767 Shewana3_3768: rpmG - 50S ribosomal protein L33 (RefSeq), at 4,529,788 to 4,529,961 rpmG Shewana3_3769: rpmB - 50S ribosomal protein L28 (RefSeq), at 4,529,968 to 4,530,204 rpmB Shewana3_3770: radC - DNA repair protein RadC (RefSeq), at 4,530,327 to 4,531,004 radC Shewana3_3771: Shewana3_3771 - phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase (RefSeq), at 4,531,126 to 4,532,355 _3771 Position (kb) 4529 4530 4531Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4529.449 kb on + strandat 4529.449 kb on + strandat 4529.478 kb on - strandat 4530.321 kb on - strandat 4530.404 kb on - strand, within radCat 4530.521 kb on + strand, within radCat 4530.521 kb on + strand, within radCat 4530.528 kb on + strand, within radCat 4530.529 kb on - strand, within radCat 4530.598 kb on + strand, within radCat 4530.606 kb on - strand, within radCat 4530.643 kb on - strand, within radCat 4530.643 kb on - strand, within radCat 4530.643 kb on - strand, within radCat 4530.643 kb on - strand, within radCat 4530.643 kb on - strand, within radCat 4530.754 kb on + strand, within radCat 4530.762 kb on - strand, within radCat 4530.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,529,449 + -5.3
4,529,449 + -5.3
4,529,478 - -1.8
4,530,321 - -0.3
4,530,404 - radC Shewana3_3770 0.11 -0.9
4,530,521 + radC Shewana3_3770 0.29 +0.5
4,530,521 + radC Shewana3_3770 0.29 +0.7
4,530,528 + radC Shewana3_3770 0.30 +0.1
4,530,529 - radC Shewana3_3770 0.30 -0.1
4,530,598 + radC Shewana3_3770 0.40 +0.6
4,530,606 - radC Shewana3_3770 0.41 -0.1
4,530,643 - radC Shewana3_3770 0.47 -0.9
4,530,643 - radC Shewana3_3770 0.47 +0.8
4,530,643 - radC Shewana3_3770 0.47 +0.9
4,530,643 - radC Shewana3_3770 0.47 -0.8
4,530,643 - radC Shewana3_3770 0.47 +0.6
4,530,754 + radC Shewana3_3770 0.63 -0.1
4,530,762 - radC Shewana3_3770 0.64 +0.1
4,530,973 + -0.7

Or see this region's nucleotide sequence