Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3722 and Shewana3_3723 are separated by 317 nucleotides Shewana3_3723 and Shewana3_3724 are separated by 130 nucleotides Shewana3_3724 and Shewana3_3725 are separated by 241 nucleotides Shewana3_3725 and Shewana3_3726 overlap by 1 nucleotides
Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895
_3722
Shewana3_3723: Shewana3_3723 - ribonuclease activity regulator protein RraA (RefSeq), at 4,466,213 to 4,466,698
_3723
Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881
_3724
Shewana3_3725: Shewana3_3725 - demethylmenaquinone methyltransferase (RefSeq), at 4,468,123 to 4,468,878
_3725
Shewana3_3726: Shewana3_3726 - hypothetical protein (RefSeq), at 4,468,878 to 4,469,498
_3726
Position (kb)
4466
4467
4468 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4465.897 kb on + strand at 4465.913 kb on - strand at 4466.108 kb on + strand at 4466.226 kb on + strand at 4466.226 kb on + strand at 4466.226 kb on + strand at 4466.234 kb on - strand at 4466.234 kb on - strand at 4466.339 kb on + strand, within Shewana3_3723 at 4466.348 kb on + strand, within Shewana3_3723 at 4466.624 kb on - strand, within Shewana3_3723 at 4466.688 kb on + strand at 4466.798 kb on + strand at 4466.876 kb on - strand at 4466.878 kb on + strand at 4466.878 kb on + strand at 4466.939 kb on + strand, within Shewana3_3724 at 4467.178 kb on + strand, within Shewana3_3724 at 4467.183 kb on + strand, within Shewana3_3724 at 4467.191 kb on - strand, within Shewana3_3724 at 4467.270 kb on - strand, within Shewana3_3724 at 4467.444 kb on + strand, within Shewana3_3724 at 4467.463 kb on + strand, within Shewana3_3724 at 4467.700 kb on + strand, within Shewana3_3724 at 4467.738 kb on + strand, within Shewana3_3724 at 4467.755 kb on - strand, within Shewana3_3724 at 4467.778 kb on + strand at 4467.873 kb on + strand at 4467.947 kb on - strand at 4468.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,465,897 + -0.3 4,465,913 - +0.8 4,466,108 + -1.3 4,466,226 + +0.5 4,466,226 + +0.2 4,466,226 + +0.3 4,466,234 - +0.2 4,466,234 - +0.3 4,466,339 + Shewana3_3723 0.26 -1.4 4,466,348 + Shewana3_3723 0.28 -0.7 4,466,624 - Shewana3_3723 0.85 +0.1 4,466,688 + +0.6 4,466,798 + +0.3 4,466,876 - -0.3 4,466,878 + -0.4 4,466,878 + -1.6 4,466,939 + Shewana3_3724 0.10 -0.0 4,467,178 + Shewana3_3724 0.33 -0.9 4,467,183 + Shewana3_3724 0.34 -0.9 4,467,191 - Shewana3_3724 0.34 -0.9 4,467,270 - Shewana3_3724 0.42 -3.7 4,467,444 + Shewana3_3724 0.58 +1.5 4,467,463 + Shewana3_3724 0.60 +0.1 4,467,700 + Shewana3_3724 0.83 -1.8 4,467,738 + Shewana3_3724 0.86 -1.0 4,467,755 - Shewana3_3724 0.88 -0.1 4,467,778 + +0.6 4,467,873 + +0.1 4,467,947 - -0.9 4,468,077 + -1.7
Or see this region's nucleotide sequence