Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3570 and Shewana3_3571 are separated by 129 nucleotides Shewana3_3571 and Shewana3_3572 are separated by 3 nucleotides
Shewana3_3570: Shewana3_3570 - LysR family transcriptional regulator (RefSeq), at 4,282,121 to 4,283,116
_3570
Shewana3_3571: Shewana3_3571 - RND family efflux transporter MFP subunit (RefSeq), at 4,283,246 to 4,284,328
_3571
Shewana3_3572: Shewana3_3572 - acriflavin resistance protein (RefSeq), at 4,284,332 to 4,287,415
_3572
Position (kb)
4283
4284
4285 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4282.408 kb on + strand, within Shewana3_3570 at 4282.490 kb on - strand, within Shewana3_3570 at 4282.587 kb on + strand, within Shewana3_3570 at 4282.637 kb on + strand, within Shewana3_3570 at 4282.662 kb on - strand, within Shewana3_3570 at 4282.812 kb on - strand, within Shewana3_3570 at 4283.332 kb on - strand at 4283.337 kb on + strand at 4283.437 kb on - strand, within Shewana3_3571 at 4283.605 kb on + strand, within Shewana3_3571 at 4283.605 kb on + strand, within Shewana3_3571 at 4283.654 kb on - strand, within Shewana3_3571 at 4283.656 kb on + strand, within Shewana3_3571 at 4283.784 kb on - strand, within Shewana3_3571 at 4283.856 kb on + strand, within Shewana3_3571 at 4284.181 kb on - strand, within Shewana3_3571 at 4284.193 kb on - strand, within Shewana3_3571 at 4284.207 kb on + strand, within Shewana3_3571 at 4284.207 kb on + strand, within Shewana3_3571 at 4284.232 kb on - strand at 4284.296 kb on - strand at 4284.657 kb on - strand, within Shewana3_3572 at 4284.659 kb on - strand, within Shewana3_3572 at 4284.666 kb on + strand, within Shewana3_3572 at 4284.723 kb on - strand, within Shewana3_3572 at 4284.774 kb on - strand, within Shewana3_3572 at 4284.843 kb on - strand, within Shewana3_3572 at 4284.995 kb on - strand, within Shewana3_3572 at 4285.043 kb on + strand, within Shewana3_3572 at 4285.043 kb on + strand, within Shewana3_3572 at 4285.051 kb on - strand, within Shewana3_3572 at 4285.061 kb on + strand, within Shewana3_3572 at 4285.083 kb on + strand, within Shewana3_3572 at 4285.148 kb on - strand, within Shewana3_3572 at 4285.328 kb on + strand, within Shewana3_3572
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,282,408 + Shewana3_3570 0.29 -1.7 4,282,490 - Shewana3_3570 0.37 -3.7 4,282,587 + Shewana3_3570 0.47 -1.5 4,282,637 + Shewana3_3570 0.52 -3.7 4,282,662 - Shewana3_3570 0.54 -1.7 4,282,812 - Shewana3_3570 0.69 -0.7 4,283,332 - +0.7 4,283,337 + +0.2 4,283,437 - Shewana3_3571 0.18 +0.7 4,283,605 + Shewana3_3571 0.33 +0.4 4,283,605 + Shewana3_3571 0.33 +0.0 4,283,654 - Shewana3_3571 0.38 +1.0 4,283,656 + Shewana3_3571 0.38 -0.9 4,283,784 - Shewana3_3571 0.50 -0.0 4,283,856 + Shewana3_3571 0.56 +0.7 4,284,181 - Shewana3_3571 0.86 +0.9 4,284,193 - Shewana3_3571 0.87 +0.3 4,284,207 + Shewana3_3571 0.89 -1.4 4,284,207 + Shewana3_3571 0.89 +0.1 4,284,232 - +0.2 4,284,296 - -1.5 4,284,657 - Shewana3_3572 0.11 +0.6 4,284,659 - Shewana3_3572 0.11 +0.3 4,284,666 + Shewana3_3572 0.11 -0.2 4,284,723 - Shewana3_3572 0.13 -4.4 4,284,774 - Shewana3_3572 0.14 +0.8 4,284,843 - Shewana3_3572 0.17 +0.4 4,284,995 - Shewana3_3572 0.21 -1.0 4,285,043 + Shewana3_3572 0.23 +0.1 4,285,043 + Shewana3_3572 0.23 -0.0 4,285,051 - Shewana3_3572 0.23 +0.4 4,285,061 + Shewana3_3572 0.24 -0.1 4,285,083 + Shewana3_3572 0.24 +0.3 4,285,148 - Shewana3_3572 0.26 -1.5 4,285,328 + Shewana3_3572 0.32 -2.7
Or see this region's nucleotide sequence