Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3566 and groEL are separated by 501 nucleotides groEL and groES are separated by 57 nucleotides groES and Shewana3_3569 are separated by 227 nucleotides
Shewana3_3566: Shewana3_3566 - hypothetical protein (RefSeq), at 4,276,585 to 4,278,051
_3566
Shewana3_3567: groEL - chaperonin GroEL (RefSeq), at 4,278,553 to 4,280,190
groEL
Shewana3_3568: groES - co-chaperonin GroES (RefSeq), at 4,280,248 to 4,280,538
groES
Shewana3_3569: Shewana3_3569 - MATE efflux family protein (RefSeq), at 4,280,766 to 4,282,124
_3569
Position (kb)
4278
4279
4280
4281 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4277.572 kb on + strand, within Shewana3_3566 at 4277.602 kb on + strand, within Shewana3_3566 at 4277.689 kb on + strand, within Shewana3_3566 at 4277.704 kb on + strand, within Shewana3_3566 at 4277.712 kb on - strand, within Shewana3_3566 at 4277.860 kb on + strand, within Shewana3_3566 at 4277.860 kb on + strand, within Shewana3_3566 at 4277.860 kb on + strand, within Shewana3_3566 at 4277.867 kb on - strand, within Shewana3_3566 at 4277.873 kb on + strand, within Shewana3_3566 at 4277.878 kb on + strand, within Shewana3_3566 at 4277.880 kb on + strand, within Shewana3_3566 at 4277.932 kb on + strand at 4277.971 kb on + strand at 4277.995 kb on + strand at 4277.995 kb on + strand at 4277.995 kb on + strand at 4277.995 kb on + strand at 4277.995 kb on + strand at 4277.995 kb on + strand at 4278.003 kb on - strand at 4278.003 kb on - strand at 4278.118 kb on + strand at 4278.118 kb on + strand at 4278.118 kb on + strand at 4278.118 kb on + strand at 4278.118 kb on + strand at 4278.118 kb on + strand at 4278.119 kb on + strand at 4278.119 kb on + strand at 4278.125 kb on - strand at 4278.127 kb on - strand at 4278.143 kb on + strand at 4278.143 kb on + strand at 4278.151 kb on - strand at 4278.173 kb on - strand at 4278.209 kb on + strand at 4278.213 kb on + strand at 4278.213 kb on + strand at 4278.213 kb on + strand at 4278.232 kb on + strand at 4278.232 kb on + strand at 4278.232 kb on - strand at 4278.240 kb on + strand at 4278.240 kb on - strand at 4278.240 kb on - strand at 4278.248 kb on - strand at 4278.277 kb on + strand at 4278.278 kb on - strand at 4278.285 kb on - strand at 4278.336 kb on - strand at 4278.365 kb on + strand at 4278.462 kb on - strand at 4280.781 kb on + strand at 4281.009 kb on + strand, within Shewana3_3569 at 4281.072 kb on - strand, within Shewana3_3569 at 4281.072 kb on - strand, within Shewana3_3569 at 4281.133 kb on + strand, within Shewana3_3569
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,277,572 + Shewana3_3566 0.67 -0.5 4,277,602 + Shewana3_3566 0.69 +0.9 4,277,689 + Shewana3_3566 0.75 +1.5 4,277,704 + Shewana3_3566 0.76 +1.1 4,277,712 - Shewana3_3566 0.77 +0.4 4,277,860 + Shewana3_3566 0.87 -0.3 4,277,860 + Shewana3_3566 0.87 -1.1 4,277,860 + Shewana3_3566 0.87 -0.6 4,277,867 - Shewana3_3566 0.87 +0.4 4,277,873 + Shewana3_3566 0.88 +0.6 4,277,878 + Shewana3_3566 0.88 +0.8 4,277,880 + Shewana3_3566 0.88 +0.6 4,277,932 + -0.2 4,277,971 + -1.4 4,277,995 + -0.1 4,277,995 + +0.5 4,277,995 + +0.1 4,277,995 + +0.4 4,277,995 + -0.7 4,277,995 + +0.2 4,278,003 - +0.4 4,278,003 - +0.1 4,278,118 + +0.3 4,278,118 + +0.4 4,278,118 + -0.2 4,278,118 + -1.2 4,278,118 + -2.0 4,278,118 + +0.3 4,278,119 + -1.6 4,278,119 + +0.3 4,278,125 - +0.6 4,278,127 - -1.4 4,278,143 + -0.7 4,278,143 + +0.6 4,278,151 - +0.5 4,278,173 - +0.7 4,278,209 + +0.6 4,278,213 + -0.2 4,278,213 + +0.1 4,278,213 + +0.4 4,278,232 + -1.6 4,278,232 + -0.5 4,278,232 - -0.9 4,278,240 + -0.1 4,278,240 - +0.5 4,278,240 - +0.5 4,278,248 - -1.0 4,278,277 + +0.4 4,278,278 - +0.2 4,278,285 - -1.5 4,278,336 - -0.6 4,278,365 + -0.9 4,278,462 - -1.0 4,280,781 + +1.1 4,281,009 + Shewana3_3569 0.18 +0.9 4,281,072 - Shewana3_3569 0.23 +2.8 4,281,072 - Shewana3_3569 0.23 +1.1 4,281,133 + Shewana3_3569 0.27 +2.0
Or see this region's nucleotide sequence