Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3567

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3566 and groEL are separated by 501 nucleotidesgroEL and groES are separated by 57 nucleotidesgroES and Shewana3_3569 are separated by 227 nucleotides Shewana3_3566: Shewana3_3566 - hypothetical protein (RefSeq), at 4,276,585 to 4,278,051 _3566 Shewana3_3567: groEL - chaperonin GroEL (RefSeq), at 4,278,553 to 4,280,190 groEL Shewana3_3568: groES - co-chaperonin GroES (RefSeq), at 4,280,248 to 4,280,538 groES Shewana3_3569: Shewana3_3569 - MATE efflux family protein (RefSeq), at 4,280,766 to 4,282,124 _3569 Position (kb) 4278 4279 4280 4281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4277.572 kb on + strand, within Shewana3_3566at 4277.602 kb on + strand, within Shewana3_3566at 4277.689 kb on + strand, within Shewana3_3566at 4277.704 kb on + strand, within Shewana3_3566at 4277.712 kb on - strand, within Shewana3_3566at 4277.860 kb on + strand, within Shewana3_3566at 4277.860 kb on + strand, within Shewana3_3566at 4277.860 kb on + strand, within Shewana3_3566at 4277.867 kb on - strand, within Shewana3_3566at 4277.873 kb on + strand, within Shewana3_3566at 4277.878 kb on + strand, within Shewana3_3566at 4277.880 kb on + strand, within Shewana3_3566at 4277.932 kb on + strandat 4277.971 kb on + strandat 4277.995 kb on + strandat 4277.995 kb on + strandat 4277.995 kb on + strandat 4277.995 kb on + strandat 4277.995 kb on + strandat 4277.995 kb on + strandat 4278.003 kb on - strandat 4278.003 kb on - strandat 4278.118 kb on + strandat 4278.118 kb on + strandat 4278.118 kb on + strandat 4278.118 kb on + strandat 4278.118 kb on + strandat 4278.118 kb on + strandat 4278.119 kb on + strandat 4278.119 kb on + strandat 4278.125 kb on - strandat 4278.127 kb on - strandat 4278.143 kb on + strandat 4278.143 kb on + strandat 4278.151 kb on - strandat 4278.173 kb on - strandat 4278.209 kb on + strandat 4278.213 kb on + strandat 4278.213 kb on + strandat 4278.213 kb on + strandat 4278.232 kb on + strandat 4278.232 kb on + strandat 4278.232 kb on - strandat 4278.240 kb on + strandat 4278.240 kb on - strandat 4278.240 kb on - strandat 4278.248 kb on - strandat 4278.277 kb on + strandat 4278.278 kb on - strandat 4278.285 kb on - strandat 4278.336 kb on - strandat 4278.365 kb on + strandat 4278.462 kb on - strandat 4280.781 kb on + strandat 4281.009 kb on + strand, within Shewana3_3569at 4281.072 kb on - strand, within Shewana3_3569at 4281.072 kb on - strand, within Shewana3_3569at 4281.133 kb on + strand, within Shewana3_3569

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,277,572 + Shewana3_3566 0.67 -0.5
4,277,602 + Shewana3_3566 0.69 +0.9
4,277,689 + Shewana3_3566 0.75 +1.5
4,277,704 + Shewana3_3566 0.76 +1.1
4,277,712 - Shewana3_3566 0.77 +0.4
4,277,860 + Shewana3_3566 0.87 -0.3
4,277,860 + Shewana3_3566 0.87 -1.1
4,277,860 + Shewana3_3566 0.87 -0.6
4,277,867 - Shewana3_3566 0.87 +0.4
4,277,873 + Shewana3_3566 0.88 +0.6
4,277,878 + Shewana3_3566 0.88 +0.8
4,277,880 + Shewana3_3566 0.88 +0.6
4,277,932 + -0.2
4,277,971 + -1.4
4,277,995 + -0.1
4,277,995 + +0.5
4,277,995 + +0.1
4,277,995 + +0.4
4,277,995 + -0.7
4,277,995 + +0.2
4,278,003 - +0.4
4,278,003 - +0.1
4,278,118 + +0.3
4,278,118 + +0.4
4,278,118 + -0.2
4,278,118 + -1.2
4,278,118 + -2.0
4,278,118 + +0.3
4,278,119 + -1.6
4,278,119 + +0.3
4,278,125 - +0.6
4,278,127 - -1.4
4,278,143 + -0.7
4,278,143 + +0.6
4,278,151 - +0.5
4,278,173 - +0.7
4,278,209 + +0.6
4,278,213 + -0.2
4,278,213 + +0.1
4,278,213 + +0.4
4,278,232 + -1.6
4,278,232 + -0.5
4,278,232 - -0.9
4,278,240 + -0.1
4,278,240 - +0.5
4,278,240 - +0.5
4,278,248 - -1.0
4,278,277 + +0.4
4,278,278 - +0.2
4,278,285 - -1.5
4,278,336 - -0.6
4,278,365 + -0.9
4,278,462 - -1.0
4,280,781 + +1.1
4,281,009 + Shewana3_3569 0.18 +0.9
4,281,072 - Shewana3_3569 0.23 +2.8
4,281,072 - Shewana3_3569 0.23 +1.1
4,281,133 + Shewana3_3569 0.27 +2.0

Or see this region's nucleotide sequence