Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3410

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpanC and Shewana3_3410 are separated by 291 nucleotidesShewana3_3410 and Shewana3_3411 are separated by 61 nucleotides Shewana3_3409: panC - pantoate--beta-alanine ligase (RefSeq), at 4,077,644 to 4,078,489 panC Shewana3_3410: Shewana3_3410 - hypothetical protein (RefSeq), at 4,078,781 to 4,079,302 _3410 Shewana3_3411: Shewana3_3411 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 4,079,364 to 4,081,871 _3411 Position (kb) 4078 4079 4080Strain fitness (log2 ratio) -3 -2 -1 0 1at 4078.547 kb on - strandat 4078.547 kb on - strandat 4078.547 kb on - strandat 4078.547 kb on - strandat 4078.552 kb on - strandat 4078.665 kb on + strandat 4079.051 kb on - strand, within Shewana3_3410at 4079.370 kb on - strandat 4079.370 kb on - strandat 4079.530 kb on + strandat 4079.656 kb on - strand, within Shewana3_3411at 4079.682 kb on + strand, within Shewana3_3411at 4079.894 kb on - strand, within Shewana3_3411at 4080.022 kb on + strand, within Shewana3_3411at 4080.057 kb on + strand, within Shewana3_3411at 4080.065 kb on - strand, within Shewana3_3411at 4080.065 kb on - strand, within Shewana3_3411at 4080.171 kb on - strand, within Shewana3_3411at 4080.253 kb on - strand, within Shewana3_3411

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,078,547 - -0.9
4,078,547 - -3.7
4,078,547 - +0.3
4,078,547 - -1.3
4,078,552 - -0.4
4,078,665 + -1.4
4,079,051 - Shewana3_3410 0.52 +0.2
4,079,370 - +0.3
4,079,370 - +0.5
4,079,530 + -0.6
4,079,656 - Shewana3_3411 0.12 +0.2
4,079,682 + Shewana3_3411 0.13 -0.7
4,079,894 - Shewana3_3411 0.21 +0.4
4,080,022 + Shewana3_3411 0.26 -0.2
4,080,057 + Shewana3_3411 0.28 +1.2
4,080,065 - Shewana3_3411 0.28 -0.8
4,080,065 - Shewana3_3411 0.28 +0.9
4,080,171 - Shewana3_3411 0.32 +0.4
4,080,253 - Shewana3_3411 0.35 +0.4

Or see this region's nucleotide sequence